| Right-sizing compute resource allocations for bioinformatics tools with Total Perspective Vortex N Goonasekera, C Bromhead, S Gladman, N Coraor, B Gruning, E Afgan arXiv preprint arXiv:2312.02060, 2023 | | 2023 |
| Managing Galaxy on Kubernetes N Goonasekera, E Afgan, A Mahmoud, P Moreno, J Davis Galaxy Training Network, 2023 | | 2023 |
| Galaxy Installation on Kubernetes P Moreno, E Afgan, N Goonasekera, A Mahmoud, J Davis Galaxy Training Network, 2023 | | 2023 |
| Galaxy workflows in Dockstore A Khadilkar, C Overbeck, E Afgan Galaxy Training Network, 2023 | | 2023 |
| Jetstream2 NSF Annual Report October 1, 2022–September 30, 2023 DY Hancock, N Merchant, J Fischer, JM Lowe, W Snapp-Childs, ... | | 2023 |
| Hands-on: Hands-on: Reference Data with Data Managers S Gladman, E Afgan Galaxy Training Network, 2023 | | 2023 |
| Custos Secrets: a Service for Managing User-Provided Resource Credential Secrets for Science Gateways I Ranawaka, N Goonasekara, E Afgan, J Basney, S Marru, M Pierce Practice and Experience in Advanced Research Computing, 1-4, 2022 | 1 | 2022 |
| Inverting the model of genomics data sharing with the NHGRI Genomic Data Science Analysis, Visualization, and Informatics Lab-space MC Schatz, AA Philippakis, E Afgan, E Banks, VJ Carey, RJ Carroll, ... Cell Genomics 2 (1), 2022 | 94 | 2022 |
| Jetstream2 NSF Annual Report October 1, 2021–September 30, 2022 DY Hancock, N Merchant, J Fischer, JM Lowe, W Snapp-Childs, ... | | 2022 |
| Experiences with Integrating Custos SecurityServices I Ranawaka, S Liyanage, D Baker, A Mahmoud, J Graham, T Fleury, ... arXiv preprint arXiv:2107.04172, 2021 | | 2021 |
| GYAN: Accelerating bioinformatics tools in galaxy with GPU-aware computation mapping G Gudukbay, JR Gunasekaran, Y Feng, MT Kandemir, A Nekrutenko, ... 2021 IEEE International Parallel and Distributed Processing Symposium …, 2021 | 4 | 2021 |
| GalaxyCloudRunner: enhancing scalable computing for Galaxy N Goonasekera, A Mahmoud, J Chilton, E Afgan Bioinformatics 37 (12), 1763-1765, 2021 | 2 | 2021 |
| Using Galaxy to Perform Large‐Scale Interactive Data Analyses—An Update A Ostrovsky, J Hillman‐Jackson, D Bouvier, D Clements, E Afgan, ... Current Protocols 1 (2), e31, 2021 | 5 | 2021 |
| Jetstream NSF Annual Report December 1, 2020–November 30, 2021 DY Hancock, N Merchant, JM Lowe, L Liming, J Taylor, E Afgan, G Turner, ... | | 2021 |
| Custos: Security middleware for science gateways I Ranawaka, S Marru, J Graham, A Bisht, J Basney, T Fleury, J Gaynor, ... Practice and Experience in Advanced Research Computing, 278-284, 2020 | 15 | 2020 |
| The Galaxy platform for accessible, reproducible and collaborative biomedical analyses: 2020 update V Jalili, E Afgan, Q Gu, D Clements, D Blankenberg, J Goecks, J Taylor, ... Nucleic acids research 48 (W1), W395-W402, 2020 | 435 | 2020 |
| Exchange of clinical and omics data according to FAIR principles: a review of open source solutions P Pugliese, C Knell, J Christoph Methods of Information in Medicine 59 (S 01), e13-e20, 2020 | 7 | 2020 |
| Jetstream NSF Annual Report December 1, 2019–November 30, 2020 DY Hancock, N Merchant, JM Lowe, J Fischer, L Liming, J Taylor, E Afgan, ... | | 2020 |
| Jetstream (NSF Award 1445604) Annual Report: December 1, 2018–November 28, 2019 DY Hancock, N Merchant, JM Lowe, J Fischer, L Liming, J Taylor, E Afgan, ... | | 2019 |
| Jetstream—Early operations performance, adoption, and impacts DY Hancock, CA Stewart, M Vaughn, J Fischer, JM Lowe, G Turner, ... Concurrency and Computation: Practice and Experience 31 (16), e4683, 2019 | 8 | 2019 |
