Synchronized Optimal Transport for Joint Modeling of Dynamics Across Multiple Spaces Z Cang, Y Zhao arXiv preprint arXiv:2406.03319, 2024 | | 2024 |
Topological and geometric analysis of cell states in single-cell transcriptomic data T Huynh, Z Cang Briefings in Bioinformatics 25 (3), bbae176, 2024 | 3 | 2024 |
Poisson-Boltzmann based machine learning (PBML) model for electrostatic analysis J Chen, Y Xu, X Yang, Z Cang, W Geng, GW Wei Biophysical Journal, 2024 | 1 | 2024 |
Supervised Gromov-Wasserstein Optimal Transport Z Cang, Y Wu, Y Zhao arXiv preprint arXiv:2401.06266, 2024 | | 2024 |
AVIDA: An alternating method for visualizing and integrating data K Dover, Z Cang, A Ma, Q Nie, R Vershynin Journal of Computational Science, 101998, 2023 | 1 | 2023 |
Screening cell–cell communication in spatial transcriptomics via collective optimal transport Z Cang, Y Zhao, AA Almet, A Stabell, R Ramos, MV Plikus, SX Atwood, ... Nature Methods, 1-11, 2023 | 111 | 2023 |
Supervised Optimal Transport Z Cang, Q Nie, Y Zhao SIAM Journal on Applied Mathematics 82 (5), 1851-1877, 2022 | 3 | 2022 |
System and methods for electrostatic analysis with machine learning model G Wei, Z Cang, J Chen, G Weihua US Patent App. 17/637,440, 2022 | | 2022 |
Identifying multicellular spatiotemporal organization of cells with SpaceFlow H Ren, BL Walker, Z Cang, Q Nie Nature Communications 13 (1), 1-14, 2022 | 59 | 2022 |
Deciphering tissue structure and function using spatial transcriptomics BL Walker, Z Cang, H Ren, E Bourgain-Chang, Q Nie Communications Biology 5 (1), 1-10, 2022 | 61 | 2022 |
Single-cell transcriptomic analysis of zebrafish cranial neural crest reveals spatiotemporal regulation of lineage decisions during development D Tatarakis, Z Cang, X Wu, PP Sharma, M Karikomi, AL MacLean, Q Nie, ... Cell Reports 37 (12), 110140, 2021 | 27 | 2021 |
A Study of Gene Expression, Structure, and Contractility of iPSC-Derived Cardiac Myocytes from a Family with Heart Disease due to LMNA Mutation M Mehrabi, TA Morris, Z Cang, CHH Nguyen, Y Sha, MN Asad, ... Annals of biomedical engineering 49 (12), 3524-3539, 2021 | 7 | 2021 |
Scan-IT: Domain segmentation of spatial transcriptomics images by graph neural network Z Cang, X Ning, A Nie, M Xu, J Zhang British Machine Vision Conference, 2021 | 10 | 2021 |
Charge substitutions at the voltage-sensing module of domain III enhance actions of site-3 and site-4 toxins on an insect sodium channel Q Zhu, Y Du, Y Nomura, R Gao, Z Cang, GW Wei, D Gordon, M Gurevitz, ... Insect biochemistry and molecular biology 137, 103625, 2021 | 3 | 2021 |
The landscape of cell–cell communication through single-cell transcriptomics AA Almet, Z Cang, S Jin, Q Nie Current opinion in systems biology 26, 12-23, 2021 | 137 | 2021 |
DEEPsc: a deep learning-based map connecting single-cell transcriptomics and spatial imaging data F Maseda, Z Cang, Q Nie Frontiers in Genetics 12, 636743, 2021 | 30 | 2021 |
A multiscale model via single-cell transcriptomics reveals robust patterning mechanisms during early mammalian embryo development Z Cang, Y Wang, Q Wang, KWY Cho, W Holmes, Q Nie PLoS computational biology 17 (3), e1008571, 2021 | 22 | 2021 |
Systems and methods for drug design and discovery comprising applications of machine learning with differential geometric modeling G Wei, D Nguyen, Z Cang US Patent App. 17/043,551, 2021 | 31* | 2021 |
Evolutionary homology on coupled dynamical systems with applications to protein flexibility analysis Z Cang, E Munch, GW Wei Journal of Applied and Computational Topology 4 (4), 481-507, 2020 | 14* | 2020 |
Structural cavities are critical to balancing stability and activity of a membrane-integral enzyme R Guo, Z Cang, J Yao, M Kim, E Deans, G Wei, S Kang, H Hong Proceedings of the National Academy of Sciences 117 (36), 22146-22156, 2020 | 24 | 2020 |