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| Dissemination and persistence of antimicrobial resistance (AMR) along the wastewater-river continuum DS Read, HS Gweon, MJ Bowes, MF Anjum, DW Crook, KK Chau, ... Water Research 264, 122204, 2024 | 1 | 2024 |
| Infection Inspection: using the power of citizen science for image-based prediction of antibiotic resistance in Escherichia coli treated with ciprofloxacin A Farrar, C Feehily, P Turner, A Zagajewski, S Chatzimichail, D Crook, ... Scientific Reports 14 (1), 19543, 2024 | | 2024 |
| Anticipated Coverage of the ExPEC9V Vaccine Amongst Global Urinary Tract and Bloodstream Infection-associated Escherichia Coli M Colpus, K Chau, P Turner, N Luthfee, DF Kelly, AJ Pollard, CE Moore, ... | | 2024 |
| Retrospective analysis of hospital electronic health records reveals unseen cases of acute hepatitis with unknown aetiology in adults in Oxfordshire CCS Tan, G Kelly, J Cregan, JD Wilson, T James, M Chand, S Hopkins, ... BMC Public Health 24 (1), 1890, 2024 | | 2024 |
| Exploring uncatalogued genetic variation in antimicrobial resistance gene families in Escherichia coli, an observational analysis S Lipworth, D Crook, A Walker, T Peto, N Stoesser Lancet Microbe, 2024 | | 2024 |
| Improving the representativeness of UK’s national COVID-19 Infection Survey through spatio-temporal regression and post-stratification KB Pouwels, DW Eyre, T House, B Aspey, PC Matthews, N Stoesser, ... Nature Communications 15 (1), 5340, 2024 | 1 | 2024 |
| Ribosome Phenotypes Enable Rapid Antibiotic Susceptibility Testing in Escherichia coli A Farrar, P Turner, HE Sayyed, C Feehily, S Chatzimichail, D Crook, ... medRxiv, 2024.06. 18.24309111, 2024 | | 2024 |
| Nanopore sequencing of influenza A and B in Oxfordshire and the United Kingdom, 2022–23 J Cane, N Sanderson, S Barnett, A Vaughan, M Pott, N Kapel, M Morgan, ... Journal of Infection 88 (6), 106164, 2024 | | 2024 |
| Detecting changes in population trends in infection surveillance using community SARS-CoV-2 prevalence as an exemplar E Pritchard, KD Vihta, DW Eyre, S Hopkins, TEA Peto, PC Matthews, ... American Journal of Epidemiology, kwae091, 2024 | | 2024 |
| Evaluation of the accuracy of bacterial genome reconstruction with Oxford Nanopore R10. 4.1 long-read-only sequencing ND Sanderson, KMV Hopkins, M Colpus, M Parker, S Lipworth, D Crook, ... Microbial Genomics 10 (5), 001246, 2024 | 6 | 2024 |
| SARS-CoV-2, influenza A/B and respiratory syncytial virus positivity and association with influenza-like illness and self-reported symptoms, over the 2022/23 winter season in … E Dietz, E Pritchard, K Pouwels, M Ehsaan, J Blake, C Gaughan, E Haduli, ... BMC medicine 22 (1), 143, 2024 | 1 | 2024 |
| The plasmidome associated with Gram-negative bloodstream infections: A large-scale observational study using complete plasmid assemblies S Lipworth, W Matlock, L Shaw, KD Vihta, G Rodger, K Chau, L Barker, ... nature communications 15 (1), 1612, 2024 | 3 | 2024 |
| Risk of SARS-CoV-2 reinfection during multiple Omicron variant waves in the UK general population J Wei, N Stoesser, PC Matthews, T Khera, O Gethings, I Diamond, ... Nature Communications 15 (1), 1008, 2024 | 13 | 2024 |
| Epidemiology and microbiology of recurrent UTI in women in the community in Oxfordshire, UK MDLA Vazquez-Montes, TR Fanshawe, N Stoesser, AS Walker, C Butler, ... JAC-Antimicrobial Resistance 6 (1), dlad156, 2024 | 4 | 2024 |
| A workflow for the detection of antibiotic residues, measurement of water chemistry and preservation of hospital sink drain samples for metagenomic sequencing G Rodger, K Chau, P Aranega-Bou, A Roohi, G Moore, KL Hopkins, ... Journal of Hospital Infection 144, 128-136, 2024 | 2 | 2024 |
| E. coli phylogeny drives co-amoxiclav resistance through variable expression of blaTEM-1 W Matlock, G Rodger, E Pritchard, M Colpus, N Kapel, L Barrett, ... bioRxiv, 2024.08. 12.607562, 2024 | | 2024 |
| Estimating the effect of antimicrobial resistance genes on minimum inhibitory concentration in Escherichia coli S Lipworth, K Chau, S Oakley, L Barrett, D Crook, T Peto, ASE Walker, ... medRxiv, 2024.05. 15.24307162, 2024 | | 2024 |
| Diversity, functional classification and genotyping of SHV β-lactamases in Klebsiella pneumoniae KK Tsang, MMC Lam, RR Wick, KL Wyres, MA Bachman, S Baker, K Barry, ... bioRxiv, 2024.04. 05.587953, 2024 | | 2024 |
| Global genomic epidemiology of blaGES-5 carbapenemase-associated integrons W Matlock, LP Shaw, N Stoesser bioRxiv, 2024.02. 09.579496, 2024 | | 2024 |
