High UV damage and low repair, but not cytosine deamination, stimulate mutation hotspots at ETS binding sites in melanoma M Duan, S Song, H Wasserman, PH Lee, KJ Liu, R Gordân, Y He, P Mao Proceedings of the National Academy of Sciences 121 (4), e2310854121, 2024 | | 2024 |
Investigating the Mechanical Properties and Flexibility of N-BAR Domains in PICK1 by Molecular Dynamics Simulations S Song, T Li, AO Stevens, T Raad, Y He Current Protein and Peptide Science 24 (10), 865-877, 2023 | 1 | 2023 |
Exploring computational tools for improved structural design and stability of helical AApeptides T Li, S Song, Y He Supramolecular Materials 2, 100038, 2023 | 1 | 2023 |
AlphaFold Accurately Predicts the Structure of Ribosomally Synthesized and Post-Translationally Modified Peptide Biosynthetic Enzymes CH Gordon, E Hendrix, Y He, MC Walker Biomolecules 13 (8), 1243, 2023 | 1 | 2023 |
Mammalian ATG8 proteins maintain autophagosomal membrane integrity through ESCRTs R Javed, A Jain, T Duque, E Hendrix, MA Paddar, S Khan, ... The EMBO Journal 42 (14), e112845, 2023 | 7 | 2023 |
Key Factors Regulating the Interdomain Dynamics May Contribute to the Assembly of ASC T Li, LI Gil Pineda, AO Stevens, Y He Biology 12 (6), 796, 2023 | 1 | 2023 |
Simple and Effective Conformational Sampling Strategy for Intrinsically Disordered Proteins Using the UNRES Web Server T Li, E Hendrix, Y He The Journal of Physical Chemistry B 127 (10), 2177-2186, 2023 | 4 | 2023 |
Emulsion‐Induced Polymersomes Taming Tetrodotoxin for Prolonged Duration Local Anesthesia (Adv. Therap. 1/2023) X Li, Q Li, S Song, AO Stevens, Z Broemmel, Y He, U Wesselmann, ... Advanced Therapeutics 6 (1), 2370004, 2023 | | 2023 |
Investigating the allosteric response of the PICK1 PDZ domain to different ligands with all‐atom simulations AO Stevens, IC Kazan, B Ozkan, Y He Protein Science 31 (12), e4474, 2022 | 12 | 2022 |
A polymer electrolyte with high cationic transport number for safe and stable solid Li-metal batteries X Shan, M Morey, Z Li, S Zhao, S Song, Z Xiao, H Feng, S Gao, G Li, ... ACS Energy Letters 7 (12), 4342-4351, 2022 | 27 | 2022 |
Insight into the initial stages of the folding process in onconase revealed by UNRES E Hendrix, S Motta, RF Gahl, Y He The Journal of Physical Chemistry B 126 (40), 7934-7942, 2022 | 8 | 2022 |
Three Binding Conformations of BIO124 in the Pocket of the PICK1 PDZ Domain AO Stevens, S Luo, Y He Cells 11 (15), 2451, 2022 | 5 | 2022 |
Recognizing the binding pattern and dissociation pathways of the p300 Taz2-p53 TAD2 complex T Li, S Motta, AO Stevens, S Song, E Hendrix, A Pandini, Y He JACS Au 2 (8), 1935-1945, 2022 | 13 | 2022 |
Benchmarking the accuracy of AlphaFold 2 in loop structure prediction AO Stevens, Y He Biomolecules 12 (7), 985, 2022 | 50 | 2022 |
AlphaFold illuminates half of the dark human proteins JL Binder, J Berendzen, AO Stevens, Y He, J Wang, NV Dokholyan, ... Current Opinion in Structural Biology 74, 102372, 2022 | 54 | 2022 |
Allosterism in the PDZ Family AO Stevens, Y He International Journal of Molecular Sciences 23 (3), 1454, 2022 | 10 | 2022 |
Unraveling the role of neutral units for single-ion conducting polymer electrolytes S Zhao, S Song, Y Wang, J Keum, J Zhu, Y He, AP Sokolov, PF Cao ACS Applied Materials & Interfaces 13 (43), 51525-51534, 2021 | 19 | 2021 |
Residue-level contact reveals modular domain interactions of PICK1 are driven by both electrostatic and hydrophobic forces AO Stevens, Y He Frontiers in Molecular Biosciences 7, 616135, 2021 | 8 | 2021 |
The electrostatic allostery could be the trigger for the changes in dynamics for the PDZ domain of PICK1 AO Stevens, Y He bioRxiv, 2020.10. 06.328617, 2020 | 3 | 2020 |
Changes in structure and flexibility of p53 TAD2 upon binding to p300 Taz2 T Li, AO Stevens, LI Gil Pineda, S Song, CA Ameyaw Baah, Y He Journal of Theoretical and Computational Chemistry 19 (04), 2040007, 2020 | 8 | 2020 |