Deep mutational scanning reveals functional constraints and antigenic variability of Lassa virus glycoprotein complex CR Carr, KHD Crawford, M Murphy, JG Galloway, HK Haddox, ... bioRxiv, 2024 | | 2024 |
Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin FC Welsh, RT Eguia, JM Lee, HK Haddox, J Galloway, NVV Chau, ... bioRxiv, 2023 | 4 | 2023 |
phippery: a software suite for PhIP-Seq data analysis JG Galloway, K Sung, SS Minot, ME Garrett, CI Stoddard, AC Willcox, ... Bioinformatics 39 (10), btad583, 2023 | 1 | 2023 |
Elevated binding and functional antibody responses to SARS-CoV-2 in infants versus mothers CI Stoddard, K Sung, ZA Yaffe, H Weight, G Beaudoin-Bussières, ... Nature Communications 14 (1), 4864, 2023 | 1 | 2023 |
Jointly modeling deep mutational scans identifies shifted mutational effects among SARS-CoV-2 spike homologs HK Haddox, JG Galloway, B Dadonaite, JD Bloom, FA Matsen IV, ... bioRxiv, 2023 | 4 | 2023 |
Automatic differentiation is no panacea for phylogenetic gradient computation M Fourment, CJ Swanepoel, JG Galloway, X Ji, K Gangavarapu, ... Genome biology and evolution 15 (6), evad099, 2023 | 5 | 2023 |
Deep mutational scanning of CYP2C19 reveals a substrate specificity-abundance tradeoff GE Boyle, K Sitko, JG Galloway, HK Haddox, AH Bianchi, A Dixon, ... bioRxiv, 2023.10. 06.561250, 2023 | 1 | 2023 |
Detailed analysis of antibody responses to SARS-CoV-2 vaccination and infection in macaques AC Willcox, K Sung, ME Garrett, JG Galloway, JH Erasmus, JK Logue, ... PLoS Pathogens 18 (4), e1010155, 2022 | 7 | 2022 |
Efficient ancestry and mutation simulation with msprime 1.0 F Baumdicker, G Bisschop, D Goldstein, G Gower, AP Ragsdale, ... Genetics 220 (3), iyab229, 2022 | 172 | 2022 |
Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein finds additional vaccine-induced epitopes beyond those for mild infection ME Garrett, JG Galloway, C Wolf, JK Logue, N Franko, HY Chu, ... Elife 11, e73490, 2022 | 25 | 2022 |
Macaque-human differences in SARS-CoV-2 Spike antibody response elicited by vaccination or infection AC Willcox, K Sung, ME Garrett, JG Galloway, MA O’Connor, JH Erasmus, ... bioRxiv, 2021 | 1 | 2021 |
SARS-CoV-2 antibody binding and neutralization in dried blood spot eluates and paired plasma HL Itell, H Weight, CS Fish, JK Logue, N Franko, CR Wolf, DJ McCulloch, ... Microbiology spectrum 9 (2), e01298-21, 2021 | 15 | 2021 |
Comprehensive characterization of the antibody responses to SARS-CoV-2 Spike protein after infection and/or vaccination ME Garrett, JG Galloway, C Wolf, JK Logue, N Franko, HY Chu, ... BioRxiv, 2021 | 2 | 2021 |
High-resolution profiling of pathways of escape for SARS-CoV-2 spike-binding antibodies ME Garrett, J Galloway, HY Chu, HL Itell, CI Stoddard, CR Wolf, JK Logue, ... Cell 184 (11), 2927-2938. e11, 2021 | 43 | 2021 |
Epitope profiling reveals binding signatures of SARS-CoV-2 immune response in natural infection and cross-reactivity with endemic human CoVs CI Stoddard, J Galloway, HY Chu, MM Shipley, K Sung, HL Itell, CR Wolf, ... Cell Reports 35 (8), 2021 | 51 | 2021 |
Epitope profiling reveals binding signatures of SARS-CoV-2 immune response and cross-reactivity with endemic HCoVs CI Stoddard, J Galloway, HY Chu, MM Shipley, HL Itell, CR Wolf, ... bioRxiv, 2020.10. 29.360800, 2020 | 1 | 2020 |
A community-maintained standard library of population genetic models JR Adrion, CB Cole, N Dukler, JG Galloway, AL Gladstein, G Gower, ... elife 9, e54967, 2020 | 128 | 2020 |
Predicting the landscape of recombination using deep learning JR Adrion, JG Galloway, AD Kern Molecular biology and evolution 37 (6), 1790-1808, 2020 | 102 | 2020 |
A few stickleback suffice for the transport of alleles to new lakes J Galloway, WA Cresko, P Ralph G3: Genes, Genomes, Genetics 10 (2), 505-514, 2020 | 22 | 2020 |
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