Black chromatin is indispensable for accurate simulations of Drosophila melanogaster chromatin structure I Tuszynska, P Bednarz, B Wilczynski bioRxiv, 2021.12. 12.472204, 2021 | 1 | 2021 |
Comparative analysis of RNA 3D structure prediction methods: towards enhanced modeling of RNA–ligand interactions C Nithin, S Kmiecik, R Błaszczyk, J Nowicka, I Tuszyńska Nucleic Acids Research 52 (13), 7465-7486, 2024 | | 2024 |
Computational methods for prediction of protein–RNA interactions T Puton, L Kozlowski, I Tuszynska, K Rother, JM Bujnicki Journal of structural biology 179 (3), 261-268, 2012 | 119 | 2012 |
Computational modeling of protein–RNA complex structures I Tuszynska, D Matelska, M Magnus, G Chojnowski, JM Kasprzak, ... Methods 65 (3), 310-319, 2014 | 31 | 2014 |
Crystal structures of the tRNA:m 2 G6 methyltransferase Trm14/TrmN from two domains of life M Fislage, M Roovers, I Tuszynska, JM Bujnicki, L Droogmans, ... Nucleic acids research 40 (11), 5149-5161, 2012 | 42 | 2012 |
DARS-RNP and QUASI-RNP: new statistical potentials for protein-RNA docking I Tuszynska, JM Bujnicki BMC bioinformatics 12, 1-16, 2011 | 109 | 2011 |
Effective modeling of the chromatin structure by coarse-grained methods I Tuszynska, P Bednarz, B Wilczynski Journal of Biomolecular Structure and Dynamics, 1-9, 2023 | | 2023 |
Endothelial cell differentiation is encompassed by changes in long range interactions between inactive chromatin regions H Niskanen, I Tuszynska, R Zaborowski, M Heinäniemi, S Ylä-Herttuala, ... Nucleic acids research 46 (4), 1724-1740, 2018 | 52 | 2018 |
Engineered'restriction RNases' for sequence-specific cleavage of dsRNA and RNA in DNA-RNA hybrids JM Bujnicki, AA Sulej, D Pianka, I Tuszynska, J Czarnecka, KJ Skowronek, ... FEBS JOURNAL 280, 30-30, 2013 | | 2013 |
FILTREST3D: discrimination of structural models using restraints from experimental data MJ Gajda, I Tuszynska, M Kaczor, AY Bakulina, JM Bujnicki Bioinformatics 26 (23), 2986-2987, 2010 | 21 | 2010 |
HiCEnterprise: identifying long range chromosomal contacts in Hi-C data H Kranas, I Tuszynska, B Wilczynski PeerJ 9, e10558, 2021 | 2 | 2021 |
L15. AA Sulej, D Głów, J Czarnecka, D Pianka, G Chojnowski, I Tuszynska, ... | | |
Modeling of protein–RNA complex structures using computational docking methods B Madan, JM Kasprzak, I Tuszynska, M Magnus, K Szczepaniak, ... Computational Design of Ligand Binding Proteins, 353-372, 2016 | 9 | 2016 |
Novel inhibitors of ErmC’methyltransferase responsible for resistance to MLSB antibiotics IP Domagala, I Tuszynska, M Feder, X Lucas, KH Kaminska, E Purta, ... FEBS JOURNAL 281, 43-44, 2014 | | 2014 |
Novel inhibitors of the rRNA ErmC'methyltransferase to block resistance to macrolides, lincosamides, streptogramine B antibiotics IP Foik, I Tuszynska, M Feder, E Purta, F Stefaniak, JM Bujnicki European Journal of Medicinal Chemistry 146, 60-67, 2018 | 13 | 2018 |
NPDock: a web server for protein–nucleic acid docking I Tuszynska, M Magnus, K Jonak, W Dawson, JM Bujnicki Nucleic acids research 43 (W1), W425-W430, 2015 | 234 | 2015 |
Predicting atomic details of the unfolding pathway for YibK, a knotted protein from the SPOUT superfamily I Tuszynska, JM Bujnicki Journal of Biomolecular Structure and Dynamics 27 (4), 511-520, 2010 | 39 | 2010 |
PROTMAP2D: visualization, comparison and analysis of 2D maps of protein structure MJ Pietal, I Tuszynska, JM Bujnicki Bioinformatics 23 (11), 1429-1430, 2007 | 37 | 2007 |
RNA-Puzzles: a CASP-like evaluation of RNA three-dimensional structure prediction JA Cruz, MF Blanchet, M Boniecki, JM Bujnicki, SJ Chen, S Cao, R Das, ... Rna 18 (4), 610-625, 2012 | 293 | 2012 |
Sequence-specific cleavage of the RNA strand in DNA–RNA hybrids by the fusion of ribonuclease H with a zinc finger AA Sulej, I Tuszynska, KJ Skowronek, M Nowotny, JM Bujnicki Nucleic acids research 40 (22), 11563-11570, 2012 | 30 | 2012 |