3DVizSNP: a tool for rapidly visualizing missense mutations identified in high throughput experiments in iCn3D M Sierk, S Ratnayake, MM Wagle, B Chen, B Park, J Wang, ... BMC bioinformatics 24 (1), 244, 2023 | | 2023 |
401 Hinge length: A novel method of predicting cytotoxicity of CAR constructs against antigen-low leukemia J Mirazee, D Jia, X Chen, S Achar, C Chien, M Pouzolles, K DeDe, ... Journal for ImmunoTherapy of Cancer 10 (Suppl 2), 2022 | 2 | 2022 |
7-Transmembrane Helical (7TMH) Proteins: Pseudo-Symmetry and Conformational Plasticity P Youkharibache, A Tran, R Abrol | 1 | 2018 |
A universal residue numbering scheme for the Immunoglobulin-fold (Ig-fold) to study Ig-Proteomes and Ig-Interactomes C Tawfeeq, J Wang, U Khaniya, T Madej, J Song, R Abrol, ... bioRxiv, 2024.06. 10.598201, 2024 | | 2024 |
CD28 hinge used in chimeric antigen receptor (CAR) T-cells exhibits local structure and conformational exchange amidst global disorder V Folimonova, X Chen, H Negi, CD Schwieters, J Li, RA Byrd, N Taylor, ... Communications Biology 7 (1), 1-14, 2024 | | 2024 |
Census of internal pseudo-symmetries and similarities in protein domains A Prlic, SE Bliven, P Rose, P Youkharibache, PE Bourne ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
Crystal Structure of a Chimeric Antigen Receptor (CAR) scFv Domain Rearrangement Forming a VL-VL Dimer J Cheung, S Wazir, DR Bell, JN Kochenderfer, WA Hendrickson, ... Crystals 13 (4), 710, 2023 | | 2023 |
Enhancing CAR T cell therapy through in silico modeling of hinge sequence length based on epitope location JM Mirazee, A Aranganathan, S Achar, D Jia, X Chen, BP Vani, CD Chien, ... Biophysical Journal 123 (3), 552a, 2024 | | 2024 |
Generation of antitumor chimeric antigen receptors incorporating T cell signaling motifs L Balagopalan, T Moreno, H Qin, BC Angeles, T Kondo, J Yi, KM McIntire, ... Science Signaling 17 (846), eadp8569, 2024 | | 2024 |
Hinging on Success: Leveraging the Power of CAR T-Cell Therapy through In-Silico Modeling of Hinge Length and Epitope Location JM Mirazee, A Aranganathan, S Achar, D Jia, X Chen, B Vani, CD Chien, ... The Journal of Immunology 210 (1_Supplement), 68.06-68.06, 2023 | | 2023 |
iCn3D, a Platform to Align and Annotate AlphaFold Structures J Wang, T Madej, P Youkharibache, D Zhang, C Lanczycki, S Lu, ... Journal of Biological Chemistry 299 (3), 103422, 2023 | | 2023 |
iCn3D, a web-based 3D viewer for sharing 1D/2D/3D representations of biomolecular structures J Wang, P Youkharibache, D Zhang, CJ Lanczycki, RC Geer, T Madej, ... Bioinformatics 36 (1), 131-135, 2020 | 156 | 2020 |
iCn3D, a web-based 3D viewer for the visualization of biomolecular structure and sequence annotation J Wang, P Youkharibache, D Zhang, CJ Lanczycki, RC Geer, T Madej, ... bioRxiv, 501692, 2018 | 3 | 2018 |
iCn3D: from web-based 3D viewer to structural analysis tool in batch mode J Wang, P Youkharibache, A Marchler-Bauer, C Lanczycki, D Zhang, S Lu, ... Frontiers in molecular biosciences 9, 831740, 2022 | 41 | 2022 |
NEW INTERPRETATION OF 1ST BAND OF METHANOL PHOTOELECTRON-SPECTRUM JP Flament, Y Hoppilliard, P Jaudon, P Youkharibache NOUVEAU JOURNAL DE CHIMIE-NEW JOURNAL OF CHEMISTRY 5 (1), 61-67, 1981 | 9 | 1981 |
NOUVELLE INTERPRETATION DE LA PREMIERE BANDE DU SPECTRE PHOTOELECTRONIQUE DU METHANOL JP FLAMENT, Y HOPPILLIARD, P JAUDON, P YOUKHARIBACHE | 1 | 1981 |
Protein-protein interactions: What can we learn from symmetric oligomers? PW Rose, SE Bliven, A Prlic, PB Youkharibache, PE Bourne ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 243, 2012 | | 2012 |
Protodomains: symmetry-related supersecondary structures in proteins and self-complementarity P Youkharibache Protein Supersecondary Structures: Methods and Protocols, 187-219, 2019 | 9 | 2019 |
Pseudo-symmetric assembly of protodomains as a common denominator in the evolution of polytopic helical membrane proteins P Youkharibache, A Tran, R Abrol Journal of Molecular Evolution 88 (4), 319-344, 2020 | 5 | 2020 |
Pseudo-Symmetry and Conformational Plasticity in 7 Transmembrane Helix (7TMH) Proteins: Intragenic Duplication and Assembly of 3TMH or 4TMH Protodomains with Evolutionary … P Youkharibache, A Tran, R Abrol bioRxiv, 465302, 2018 | | 2018 |