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Linnéa Smeds
Linnéa Smeds
Bioinformatician, PhD Student, Uppsala Universitet
在 ebc.uu.se 的电子邮件经过验证
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引用次数
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A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution
T Kawakami, L Smeds, N Backström, A Husby, A Qvarnström, CF Mugal, ...
Molecular ecology 23 (16), 4035-4058, 2014
2422014
A scan for the genetic basis of cryptorchidism in inbred Scandinavian wolves using GWAS and haplotype analysis
L Smeds, H Ellegren, M Åkesson
2023
A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis)
DK Lamatsch, S Adolfsson, AM Senior, G Christiansen, M Pichler, Y Ozaki, ...
PLoS One 10 (2), e0118214, 2015
392015
Abundant recent activity of retrovirus‐like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes
A Suh, L Smeds, H Ellegren
Molecular ecology 27 (1), 99-111, 2018
612018
Appendix I January 2023 Online Meeting Participants
Ø Flagstad, I Helle, H Johansson, S Mäntyniemi, H Sand, L Smeds, ...
Bilagor till analys av vargens referensvärde i fråga om populationsstorlek …, 2024
2024
Complete sequencing of ape genomes
DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ...
bioRxiv, 2024.07. 31.605654, 2024
2024
ConDeTri-a content dependent read trimmer for Illumina data
L Smeds, A Künstner
PloS one 6 (10), e26314, 2011
2592011
Conservation genomics in inbred Scandinavian wolves using bioinformatic methods
L Smeds
Acta Universitatis Upsaliensis, 2024
2024
Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data
K Nadachowska-Brzyska, R Burri, PI Olason, T Kawakami, L Smeds, ...
PLoS genetics 9 (11), e1003942, 2013
1442013
Direct estimate of the rate of germline mutation in a bird
L Smeds, A Qvarnström, H Ellegren
Genome research 26 (9), 1211-1218, 2016
2262016
Evolutionary analysis of the female-specific avian W chromosome
L Smeds, V Warmuth, P Bolivar, S Uebbing, R Burri, A Suh, A Nater, ...
Nature communications 6 (1), 7330, 2015
1312015
From high masked to high realized genetic load in inbred Scandinavian wolves
L Smeds, H Ellegren
Molecular Ecology 32 (7), 1567-1580, 2023
242023
Gene content and patterns of gene expression in the flycatcher genome
A Künstner, S Uebbing, H Mäkinen, N Backström, L Smeds, H Ellegren
2011
Genome sequencing and conservation genomics in the Scandinavian wolverine population
R Ekblom, B Brechlin, J Persson, L Smeds, M Johansson, J Magnusson, ...
Conservation Biology 32 (6), 1301-1312, 2018
662018
Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait
A Husby, T Kawakami, L Rönnegård, L Smeds, H Ellegren, A Qvarnström
Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150156, 2015
702015
Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes
L Smeds, T Kawakami, R Burri, P Bolivar, A Husby, A Qvarnström, ...
Nature communications 5 (1), 5448, 2014
512014
Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis)
K Nadachowska‐Brzyska, L Dutoit, L Smeds, M Kardos, L Gustafsson, ...
Molecular Ecology 30 (16), 3965-3973, 2021
162021
High-resolution mapping of crossover and non-crossover recombination events by whole-genome re-sequencing of an avian pedigree
L Smeds, CF Mugal, A Qvarnström, H Ellegren
PLoS genetics 12 (5), e1006044, 2016
902016
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers
R Burri, A Nater, T Kawakami, CF Mugal, PI Olason, L Smeds, A Suh, ...
Genome research 25 (11), 1656-1665, 2015
4142015
Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria
R Ekblom, L Smeds, H Ellegren
BMC genomics 15, 1-9, 2014
812014
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