A high‐density linkage map enables a second‐generation collared flycatcher genome assembly and reveals the patterns of avian recombination rate variation and chromosomal evolution T Kawakami, L Smeds, N Backström, A Husby, A Qvarnström, CF Mugal, ... Molecular ecology 23 (16), 4035-4058, 2014 | 242 | 2014 |
A scan for the genetic basis of cryptorchidism in inbred Scandinavian wolves using GWAS and haplotype analysis L Smeds, H Ellegren, M Åkesson | | 2023 |
A Transcriptome Derived Female-Specific Marker from the Invasive Western Mosquitofish (Gambusia affinis) DK Lamatsch, S Adolfsson, AM Senior, G Christiansen, M Pichler, Y Ozaki, ... PLoS One 10 (2), e0118214, 2015 | 39 | 2015 |
Abundant recent activity of retrovirus‐like retrotransposons within and among flycatcher species implies a rich source of structural variation in songbird genomes A Suh, L Smeds, H Ellegren Molecular ecology 27 (1), 99-111, 2018 | 61 | 2018 |
Appendix I January 2023 Online Meeting Participants Ø Flagstad, I Helle, H Johansson, S Mäntyniemi, H Sand, L Smeds, ... Bilagor till analys av vargens referensvärde i fråga om populationsstorlek …, 2024 | | 2024 |
Complete sequencing of ape genomes DA Yoo, A Rhie, P Hebbar, F Antonacci, GA Logsdon, SJ Solar, D Antipov, ... bioRxiv, 2024.07. 31.605654, 2024 | | 2024 |
ConDeTri-a content dependent read trimmer for Illumina data L Smeds, A Künstner PloS one 6 (10), e26314, 2011 | 259 | 2011 |
Conservation genomics in inbred Scandinavian wolves using bioinformatic methods L Smeds Acta Universitatis Upsaliensis, 2024 | | 2024 |
Demographic divergence history of pied flycatcher and collared flycatcher inferred from whole-genome re-sequencing data K Nadachowska-Brzyska, R Burri, PI Olason, T Kawakami, L Smeds, ... PLoS genetics 9 (11), e1003942, 2013 | 144 | 2013 |
Direct estimate of the rate of germline mutation in a bird L Smeds, A Qvarnström, H Ellegren Genome research 26 (9), 1211-1218, 2016 | 226 | 2016 |
Evolutionary analysis of the female-specific avian W chromosome L Smeds, V Warmuth, P Bolivar, S Uebbing, R Burri, A Suh, A Nater, ... Nature communications 6 (1), 7330, 2015 | 131 | 2015 |
From high masked to high realized genetic load in inbred Scandinavian wolves L Smeds, H Ellegren Molecular Ecology 32 (7), 1567-1580, 2023 | 24 | 2023 |
Gene content and patterns of gene expression in the flycatcher genome A Künstner, S Uebbing, H Mäkinen, N Backström, L Smeds, H Ellegren | | 2011 |
Genome sequencing and conservation genomics in the Scandinavian wolverine population R Ekblom, B Brechlin, J Persson, L Smeds, M Johansson, J Magnusson, ... Conservation Biology 32 (6), 1301-1312, 2018 | 66 | 2018 |
Genome-wide association mapping in a wild avian population identifies a link between genetic and phenotypic variation in a life-history trait A Husby, T Kawakami, L Rönnegård, L Smeds, H Ellegren, A Qvarnström Proceedings of the Royal Society B: Biological Sciences 282 (1806), 20150156, 2015 | 70 | 2015 |
Genomic identification and characterization of the pseudoautosomal region in highly differentiated avian sex chromosomes L Smeds, T Kawakami, R Burri, P Bolivar, A Husby, A Qvarnström, ... Nature communications 5 (1), 5448, 2014 | 51 | 2014 |
Genomic inference of contemporary effective population size in a large island population of collared flycatchers (Ficedula albicollis) K Nadachowska‐Brzyska, L Dutoit, L Smeds, M Kardos, L Gustafsson, ... Molecular Ecology 30 (16), 3965-3973, 2021 | 16 | 2021 |
High-resolution mapping of crossover and non-crossover recombination events by whole-genome re-sequencing of an avian pedigree L Smeds, CF Mugal, A Qvarnström, H Ellegren PLoS genetics 12 (5), e1006044, 2016 | 90 | 2016 |
Linked selection and recombination rate variation drive the evolution of the genomic landscape of differentiation across the speciation continuum of Ficedula flycatchers R Burri, A Nater, T Kawakami, CF Mugal, PI Olason, L Smeds, A Suh, ... Genome research 25 (11), 1656-1665, 2015 | 414 | 2015 |
Patterns of sequencing coverage bias revealed by ultra-deep sequencing of vertebrate mitochondria R Ekblom, L Smeds, H Ellegren BMC genomics 15, 1-9, 2014 | 81 | 2014 |