| A general method for the derivation of the functional forms of the effective energy terms in coarse-grained energy functions of polymers. III. Determination of scale-consistent … A Liwo, AK Sieradzan, AG Lipska, C Czaplewski, IS Joung, ... The Journal of Chemical Physics 150 (15), 2019 | 48 | 2019 |
| A rigorous approach to derive analytical expressions for the effective energy terms in coarse-grained force fields JA Liwo, A Sieradzan, A Lipska, R Ganzynkowicz, M Głuski Laboratory of Molecular Modeling, 2015 | | 2015 |
| A Rigorous Approach to Derive Analytical Expressions in Coarse-Grained Force Fields AK Sieradzan, AG Lipska, R Ganzynkowicz, M Głuski, JA Liwo Biophysical Journal 110 (3), 329a, 2016 | | 2016 |
| A scale-consistent approach to coarse graining biomolecular system JA Liwo, C Czaplewski, A Sieradzan, E Lubecka, A Lipska, Ł Golon, ... Laboratory of Molecular Modeling, 2019 | | 2019 |
| An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12 C Keasar, LJ McGuffin, B Wallner, G Chopra, B Adhikari, D Bhattacharya, ... Scientific reports 8 (1), 9939, 2018 | 23 | 2018 |
| Analysis of procollagen C-proteinase enhancer-1/glycosaminoglycan binding sites and of the potential role of calcium ions in the interaction J Potthoff, KK Bojarski, G Kohut, AG Lipska, A Liwo, E Kessler, ... International Journal of Molecular Sciences 20 (20), 5021, 2019 | 12 | 2019 |
| Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 117 | 2019 |
| Chauvot de Beauchene I MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Maigret, B, 1200-1221, 2019 | 6 | 2019 |
| Coarse-grained modeling of the calcium, sodium, magnesium and potassium cations interacting with proteins AG Lipska, AM Antoniak, P Wesołowski, A Warszawski, SA Samsonov, ... Journal of Molecular Modeling 28 (7), 201, 2022 | 2 | 2022 |
| Evaluation of the scale-consistent UNRES force field in template-free prediction of protein structures in the CASP13 experiment EA Lubecka, AS Karczyńska, AG Lipska, AK Sieradzan, K Ziȩba, ... Journal of Molecular Graphics and Modelling 92, 154-166, 2019 | 21 | 2019 |
| Evolutionary diversification and characterization of the eubacterial gene family encoding DXR type II, an alternative isoprenoid biosynthetic enzyme L Carretero-Paulet, A Lipska, J Pérez-Gil, FJ Sangari, VA Albert, ... BMC evolutionary biology 13, 1-18, 2013 | 12 | 2013 |
| Extension of the Unres package for physics-based coarse-grained simulations of proteins and protein complexes to very large systems AK Sieradzan, CR Czaplewski, EA Lubecka, AG Lipska, AS Karczynska, ... Biophysical Journal 120 (3), 83a-84a, 2021 | 5 | 2021 |
| Further analyses of APRIL/APRIL-receptor/glycosaminoglycan interactions by biochemical assays linked to computational studies M Marcisz, B Huard, AG Lipska, SA Samsonov Glycobiology 31 (7), 772-786, 2021 | 10 | 2021 |
| How do the local and long-range interactions encode the three-dimensional structures of biological macromolecules: a coarse-grained perspective JA Liwo, A Sieradzan, A Lipska, R Ganzynkowicz, B Gryta, M Głuski Laboratory of Molecular Modeling, 2016 | | 2016 |
| Improved consensus-fragment selection in template-assisted prediction of protein structures with the UNRES force field in CASP13 AS Karczyńska, K Ziȩba, U Uciechowska, MA Mozolewska, P Krupa, ... Journal of Chemical Information and Modeling 60 (3), 1844-1864, 2020 | 12 | 2020 |
| Investigation of structure and dynamics of selected proteins by coarse-grained simulations A Lipska Laboratory of Molecular Modeling, 0 | | |
| Karczy nka A Liwo, C Czaplewski, AK Sieradzan, EA Lubecka, AG Lipska, Ł Golon A, 0 | 6 | |
| Long‐time scale simulations of virus‐like particles from three human‐norovirus strains AG Lipska, AK Sieradzan, C Czaplewski, AD Lipińska, KM Ocetkiewicz, ... Journal of Computational Chemistry 44 (16), 1470-1483, 2023 | 2 | 2023 |
| Modeling oligomeric protein structures with the coarse-grained UNRES force field in the CASP14 experiment P Wesołowski, A Antoniak, I Biskupek, K Bojarski, C Czaplewski, ... Intercollegiate Faculty of Biotechnology UG, 2021 | | 2021 |
| Modeling protein structures with the coarse-grained UNRES force field in the CASP14 experiment A Antoniak, I Biskupek, KK Bojarski, C Czaplewski, A Giełdoń, M Kogut, ... Journal of Molecular Graphics and Modelling 108, 108008, 2021 | 18 | 2021 |
