关注
Samuela Pasquali
Samuela Pasquali
University of Paris
在 u-paris.fr 的电子邮件经过验证
标题
引用次数
年份
Ab initio RNA folding
T Cragnolini, P Derreumaux, S Pasquali
Journal of Physics: Condensed Matter 27 (23), 233102, 2015
212015
Alpha-2-macroglobulin prevents platelet aggregation induced by brain-derived neurotrophic factor
G Jourdi, I Boukhatem, PF Barcelona, S Fleury, M Welman, HU Saragovi, ...
Biochemical Pharmacology 215, 115701, 2023
22023
Amyloid β protein and Alzheimer’s disease: When computer simulations complement experimental studies
J Nasica-Labouze, PH Nguyen, F Sterpone, O Berthoumieu, NV Buchete, ...
Chemical reviews 115 (9), 3518-3563, 2015
6172015
Analysis of protein sequence/structure similarity relationships
HH Gan, RA Perlow, S Roy, J Ko, M Wu, J Huang, S Yan, A Nicoletta, ...
Biophysical journal 83 (5), 2781-2791, 2002
1092002
Assessing RNA atomistic force fields via energy landscape explorations in implicit solvent
K Röder, S Pasquali
Biophysical Reviews, 1-11, 2024
2024
Biasing RNA coarse-grained folding simulations with small-angle X-ray scattering data
L Mazzanti, L Alferkh, E Frezza, S Pasquali
Journal of Chemical Theory and Computation 17 (10), 6509-6521, 2021
72021
Can m6A-modified RNA be used as an Anti-Viral Target?
AM Barker, K RÖder, S Pasquali, R Foster, A Whitehouse
Access Microbiology 2 (7A), 602, 2020
12020
Coarse-grained dynamic RNA titration simulations
S Pasquali, E Frezza, FL Barroso da Silva
Interface Focus 9 (3), 20180066, 2019
112019
Coarse-grained HiRE-RNA model for ab initio RNA folding beyond simple molecules, including noncanonical and multiple base pairings
T Cragnolini, Y Laurin, P Derreumaux, S Pasquali
Journal of chemical theory and computation 11 (7), 3510-3522, 2015
712015
Coarse-grained simulations complemented by atomistic molecular dynamics provide new insights into folding and unfolding of human telomeric G-quadruplexes
P Stadlbauer, L Mazzanti, T Cragnolini, DJ Wales, P Derreumaux, ...
Journal of Chemical Theory and Computation 12 (12), 6077-6097, 2016
442016
Coarse-grained simulations of RNA and DNA duplexes
T Cragnolini, P Derreumaux, S Pasquali
The Journal of Physical Chemistry B 117 (27), 8047-8060, 2013
1032013
Computer-aided comprehensive explorations of RNA structural polymorphism through complementary simulation methods
K Röder, G Stirnemann, P Faccioli, S Pasquali
QRB discovery 3, e21, 2022
52022
Controlling the lytic switch; can m6A-modified RNA be used as an Anti-Viral Target?
A Barker, C Fullenkamp, K Roder, S Pasquali, J Schneekloth, ...
Access Microbiology 4 (5), po0723, 2022
2022
Electrostatics analysis of the mutational and pH effects of the N-terminal domain self-association of the major ampullate spidroin
FLB Da Silva, S Pasquali, P Derreumaux, LG Dias
Soft Matter 12 (25), 5600-5612, 2016
362016
Elevated soluble endoglin could play a role in bleeding by interfering with platelet aggregation and thrombus stability
E Rossi, M Pericacho, A Kauskot, L Gamella-Pozuelo, A Leuci, ...
Haemophilia 30 (S1), 34-188, 2024
2024
Endoglin is an endothelial housekeeper against inflammation: insight in ECFC-related permeability through LIMK/Cofilin pathway
E Rossi, A Kauskot, F Saller, E Frezza, S Poirault-Chassac, A Lokajczyk, ...
International Journal of Molecular Sciences 22 (16), 8837, 2021
32021
Epock: rapid analysis of protein pocket dynamics
B Laurent, M Chavent, T Cragnolini, ACE Dahl, S Pasquali, ...
Bioinformatics 31 (9), 1478-1480, 2015
962015
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design
HH Gan, S Pasquali, T Schlick
Nucleic acids research 31 (11), 2926-2943, 2003
2282003
Fast coarse-grained model for RNA titration
FL Barroso da Silva, P Derreumaux, S Pasquali
The Journal of chemical physics 146 (3), 2017
162017
Fluctuation-induced interactions between dielectrics in general geometries
S Pasquali, AC Maggs
The Journal of chemical physics 129 (1), 2008
202008
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