Ab initio RNA folding T Cragnolini, P Derreumaux, S Pasquali Journal of Physics: Condensed Matter 27 (23), 233102, 2015 | 21 | 2015 |
Alpha-2-macroglobulin prevents platelet aggregation induced by brain-derived neurotrophic factor G Jourdi, I Boukhatem, PF Barcelona, S Fleury, M Welman, HU Saragovi, ... Biochemical Pharmacology 215, 115701, 2023 | 2 | 2023 |
Amyloid β protein and Alzheimer’s disease: When computer simulations complement experimental studies J Nasica-Labouze, PH Nguyen, F Sterpone, O Berthoumieu, NV Buchete, ... Chemical reviews 115 (9), 3518-3563, 2015 | 617 | 2015 |
Analysis of protein sequence/structure similarity relationships HH Gan, RA Perlow, S Roy, J Ko, M Wu, J Huang, S Yan, A Nicoletta, ... Biophysical journal 83 (5), 2781-2791, 2002 | 109 | 2002 |
Assessing RNA atomistic force fields via energy landscape explorations in implicit solvent K Röder, S Pasquali Biophysical Reviews, 1-11, 2024 | | 2024 |
Biasing RNA coarse-grained folding simulations with small-angle X-ray scattering data L Mazzanti, L Alferkh, E Frezza, S Pasquali Journal of Chemical Theory and Computation 17 (10), 6509-6521, 2021 | 7 | 2021 |
Can m6A-modified RNA be used as an Anti-Viral Target? AM Barker, K RÖder, S Pasquali, R Foster, A Whitehouse Access Microbiology 2 (7A), 602, 2020 | 1 | 2020 |
Coarse-grained dynamic RNA titration simulations S Pasquali, E Frezza, FL Barroso da Silva Interface Focus 9 (3), 20180066, 2019 | 11 | 2019 |
Coarse-grained HiRE-RNA model for ab initio RNA folding beyond simple molecules, including noncanonical and multiple base pairings T Cragnolini, Y Laurin, P Derreumaux, S Pasquali Journal of chemical theory and computation 11 (7), 3510-3522, 2015 | 71 | 2015 |
Coarse-grained simulations complemented by atomistic molecular dynamics provide new insights into folding and unfolding of human telomeric G-quadruplexes P Stadlbauer, L Mazzanti, T Cragnolini, DJ Wales, P Derreumaux, ... Journal of Chemical Theory and Computation 12 (12), 6077-6097, 2016 | 44 | 2016 |
Coarse-grained simulations of RNA and DNA duplexes T Cragnolini, P Derreumaux, S Pasquali The Journal of Physical Chemistry B 117 (27), 8047-8060, 2013 | 103 | 2013 |
Computer-aided comprehensive explorations of RNA structural polymorphism through complementary simulation methods K Röder, G Stirnemann, P Faccioli, S Pasquali QRB discovery 3, e21, 2022 | 5 | 2022 |
Controlling the lytic switch; can m6A-modified RNA be used as an Anti-Viral Target? A Barker, C Fullenkamp, K Roder, S Pasquali, J Schneekloth, ... Access Microbiology 4 (5), po0723, 2022 | | 2022 |
Electrostatics analysis of the mutational and pH effects of the N-terminal domain self-association of the major ampullate spidroin FLB Da Silva, S Pasquali, P Derreumaux, LG Dias Soft Matter 12 (25), 5600-5612, 2016 | 36 | 2016 |
Elevated soluble endoglin could play a role in bleeding by interfering with platelet aggregation and thrombus stability E Rossi, M Pericacho, A Kauskot, L Gamella-Pozuelo, A Leuci, ... Haemophilia 30 (S1), 34-188, 2024 | | 2024 |
Endoglin is an endothelial housekeeper against inflammation: insight in ECFC-related permeability through LIMK/Cofilin pathway E Rossi, A Kauskot, F Saller, E Frezza, S Poirault-Chassac, A Lokajczyk, ... International Journal of Molecular Sciences 22 (16), 8837, 2021 | 3 | 2021 |
Epock: rapid analysis of protein pocket dynamics B Laurent, M Chavent, T Cragnolini, ACE Dahl, S Pasquali, ... Bioinformatics 31 (9), 1478-1480, 2015 | 96 | 2015 |
Exploring the repertoire of RNA secondary motifs using graph theory; implications for RNA design HH Gan, S Pasquali, T Schlick Nucleic acids research 31 (11), 2926-2943, 2003 | 228 | 2003 |
Fast coarse-grained model for RNA titration FL Barroso da Silva, P Derreumaux, S Pasquali The Journal of chemical physics 146 (3), 2017 | 16 | 2017 |
Fluctuation-induced interactions between dielectrics in general geometries S Pasquali, AC Maggs The Journal of chemical physics 129 (1), 2008 | 20 | 2008 |