| Amino acid substitutions at protein–protein interfaces that modulate the oligomeric state H Nishi, M Ota Proteins: Structure, Function, and Bioinformatics 78 (6), 1563-1574, 2010 | 16 | 2010 |
| Cancer missense mutations alter binding properties of proteins and their interaction networks H Nishi, M Tyagi, S Teng, BA Shoemaker, K Hashimoto, E Alexov, ... PloS one 8 (6), e66273, 2013 | 138 | 2013 |
| Caught in self-interaction: evolutionary and functional mechanisms of protein homooligomerization K Hashimoto, H Nishi, S Bryant, AR Panchenko Physical biology 8 (3), 035007, 2011 | 136 | 2011 |
| Combination informatic and experimental approach for selecting scaffold proteins for development as antibody mimetics T Ito, H Nishi, T Kameda, M Yoshida, R Fukazawa, S Kawada, ... Chemistry Letters 50 (11), 1867-1871, 2021 | 4 | 2021 |
| Cover and spacer insertions: small nonhydrophobic accessories that assist protein oligomerization H Nishi, R Koike, M Ota Proteins: Structure, Function, and Bioinformatics 79 (8), 2372-2379, 2011 | 11 | 2011 |
| Crosstalk between signaling pathways provided by single and multiple protein phosphorylation sites H Nishi, E Demir, AR Panchenko Journal of molecular biology 427 (2), 511-520, 2015 | 56 | 2015 |
| Distribution of single‐nucleotide variants on protein–protein interaction sites and its relationship with minor allele frequency H Nishi, J Nakata, K Kinoshita Protein Science 25 (2), 316-321, 2016 | 15 | 2016 |
| Dynamic recognition and linkage specificity in K63 di-ubiquitin and TAB2 NZF domain complex K Moritsugu, H Nishi, K Inariyama, M Kobayashi, A Kidera Scientific Reports 8 (1), 16478, 2018 | 6 | 2018 |
| Evolutionary, physicochemical, and functional mechanisms of protein homooligomerization H Nishi, K Hashimoto, T Madej, AR Panchenko Progress in molecular biology and translational science 117, 3-24, 2013 | 54 | 2013 |
| H255Y and K508R missense mutations in tumour suppressor folliculin (FLCN) promote kidney cell proliferation H Hasumi, Y Hasumi, M Baba, H Nishi, M Furuya, CD Vocke, M Lang, ... Human molecular genetics 26 (2), 354-366, 2017 | 21 | 2017 |
| Identification of the sequence determinants of protein N-terminal acetylation through a decision tree approach KD Yamada, S Omori, H Nishi, M Miyagi BMC bioinformatics 18, 1-8, 2017 | 15 | 2017 |
| Molecular mechanisms of disease-causing missense mutations S Stefl, H Nishi, M Petukh, AR Panchenko, E Alexov Journal of molecular biology 425 (21), 3919-3936, 2013 | 302 | 2013 |
| Multi-omics profiling reveals phenotypic and functional heterogeneity of neutrophils in COVID-19 L Zhang, H Nishi, K Kinoshita International Journal of Molecular Sciences 25 (7), 3841, 2024 | | 2024 |
| New tools and functions in data‐out activities at Protein Data Bank Japan (PDBj) AR Kinjo, GJ Bekker, H Wako, S Endo, Y Tsuchiya, H Sato, H Nishi, ... Protein Science 27 (1), 95-102, 2018 | 79 | 2018 |
| Phosphorylation in protein-protein binding: effect on stability and function H Nishi, K Hashimoto, AR Panchenko Structure 19 (12), 1807-1815, 2011 | 366 | 2011 |
| Physicochemical mechanisms of protein regulation by phosphorylation H Nishi, A Shaytan, AR Panchenko Frontiers in genetics 5, 270, 2014 | 228 | 2014 |
| Physicochemical, functional, and evolutionary characteristics of protein loop regions in human and Escherichia coli proteomes L Zhang, H Nishi bioRxiv, 2023.06. 09.544332, 2023 | | 2023 |
| Prediction and Characterization of Disorder-Order Transition Regions in Proteins by Deep Learning Z Yan, S Omori, KD Yamada, H Nishi, K Kinoshita bioRxiv, 2021.06. 11.448022, 2021 | | 2021 |
| Regulation of protein–protein binding by coupling between phosphorylation and intrinsic disorder: analysis of human protein complexes H Nishi, JH Fong, C Chang, SA Teichmann, AR Panchenko Molecular bioSystems 9 (7), 1620-1626, 2013 | 80 | 2013 |
| Selection of target-binding proteins from the information of weakly enriched phage display libraries by deep sequencing and machine learning T Ito, TD Nguyen, Y Saito, Y Kurumida, H Nakazawa, S Kawada, H Nishi, ... MAbs 15 (1), 2168470, 2023 | 7 | 2023 |
