| A Graph-Theoretic Barcode Ordering Model for Linked-Reads Y Dufresne, C Sun, P Marijon, D Lavenier, C Chauve, R Chikhi WABI 2020-20th Workshop on Algorithms in Bioinformatics, 11-12, 2020 | 2 | 2020 |
| A GWAS of Listeria monocytogenes strains of food and clinical origins F Laporte, M Maury, E Patin, A Leclercq, L Quintana-Murci, R Chikhi, ... EUROPEAN JOURNAL OF HUMAN GENETICS 28 (SUPPL 1), 963-964, 2020 | | 2020 |
| A Novel Multi-Components Mixed Model Based Bacterial-Gwas Method and Its Application to Listeria Monocytogenes A Frouin, F Laporte, L Hafner, M Lecuit, M Maury, R Chikhi, H Aschard GENETIC EPIDEMIOLOGY 46 (7), 494-494, 2022 | | 2022 |
| A tale of optimizing the space taken by de Bruijn graphs R Chikhi Connecting with Computability: 17th Conference on Computability in Europe …, 2021 | 3 | 2021 |
| A time-and cost-effective strategy to sequence mammalian Y Chromosomes: an application to the de novo assembly of gorilla Y M Tomaszkiewicz, S Rangavittal, M Cechova, RC Sanchez, ... Genome Research 26 (4), 530-540, 2016 | 107 | 2016 |
| aKmerBroom: Ancient oral DNA decontamination using Bloom filters on k-mer sets CD González, S Rangavittal, R Vicedomini, R Chikhi, H Richard Iscience 26 (11), 2023 | | 2023 |
| Allsome sequence bloom trees C Sun, RS Harris, R Chikhi, P Medvedev International Conference on Research in Computational Molecular Biology, 272-286, 2017 | 69 | 2017 |
| Are Two Quantum Merlins Better Than One? R Chikhi | | |
| Assemblathon 1: a competitive assessment of de novo short read assembly methods D Earl, K Bradnam, JS John, A Darling, D Lin, J Fass, HOK Yu, V Buffalo, ... Genome research 21 (12), 2224-2241, 2011 | 633 | 2011 |
| Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species KR Bradnam, JN Fass, A Alexandrov, P Baranay, M Bechner, I Birol, ... Gigascience 2 (1), 2047-217X-2-10, 2013 | 797 | 2013 |
| Assembly scaffolding with PE-contaminated mate-pair libraries K Sahlin, R Chikhi, L Arvestad Bioinformatics 32 (13), 1925-1932, 2016 | 45 | 2016 |
| Benchmark data sets, software results and reference data for the first CAMI challenge A Sczyrba, P Hofman, P Belmann, D Koslicki, S Janssen, J Dröge, ... GigaScience Database, 2017 | 4 | 2017 |
| Bipartite graphs of small readability R Chikhi, V Jovičić, S Kratsch, P Medvedev, M Milanič, S Raskhodnikova, ... Theoretical Computer Science 806, 402-415, 2020 | | 2020 |
| ChoruMM: a novel multi-components mixed model based bacterial-GWAS method and its application to Listeria monocytogenes A Frouin, F Laporte, L Hafner, M Lecuit, M Maury, L Henches, R Chikhi, ... HUMAN HEREDITY 88 (SUPPL 1), 37-37, 2023 | | 2023 |
| ChoruMM: a versatile multi-components mixed model for bacterial-GWAS A Frouin, F Laporte, L Hafner, M Maury, ZR McCaw, H Julienne, ... bioRxiv, 2023.03. 28.534531, 2023 | | 2023 |
| Combining flash memory and fpgas to efficiently implement a massively parallel algorithm for content-based image retrieval R Chikhi, S Derrien, A Noumsi, P Quinton International Workshop on Applied Reconfigurable Computing, 247-258, 2007 | 15 | 2007 |
| Compacting de Bruijn graphs from sequencing data quickly and in low memory R Chikhi, A Limasset, P Medvedev Bioinformatics 32 (12), i201-i208, 2016 | 226 | 2016 |
| Comparative assessment of long-read error correction software applied to Nanopore RNA-sequencing data L Lima, C Marchet, S Caboche, C Da Silva, B Istace, JM Aury, H Touzet, ... Briefings in bioinformatics 21 (4), 1164-1181, 2020 | 44* | 2020 |
| Comparative genome analysis using sample-specific string detection in accurate long reads P Khorsand, L Denti, Human Genome Structural Variant Consortium, ... Bioinformatics advances 1 (1), vbab005, 2021 | 9 | 2021 |
| Compareads: comparing huge metagenomic experiments N Maillet, C Lemaitre, R Chikhi, D Lavenier, P Peterlongo BMC bioinformatics 13, 1-10, 2012 | 76 | 2012 |
Paul MedvedevPenn State在 cse.psu.edu 的电子邮件经过验证
