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Matan Hofree
Matan Hofree
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M Hofree
641 Spatially organized multicellular immune hubs in MMRd and MMRp colorectal cancer
J Chen, K Pelka, M Hofree, M Giannakis, G Boland, A Aguirre, ...
Journal for ImmunoTherapy of Cancer 9 (Suppl 2), A670-A670, 2021
2021
A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia
N Baryawno, D Przybylski, MS Kowalczyk, Y Kfoury, N Severe, ...
Cell 177 (7), 1915-1932. e16, 2019
7042019
A Cellular Taxonomy of the Bone Marrow Stroma in Homeostasis and Leukemia
K Gustafsson, KD Kokkaliaris, F Mercier, M Tabaka, M Hofree, D Dionne, ...
Cell 177, 1-18, 2019
2019
A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function
N Baryawno, D Przybylski, MS Kowalczyk, Y Kfoury, N Severe, ...
A cellular taxonomy of the bone marrow stroma in homeostasis and leukemia demonstrates cancer-crosstalk with stroma to impair normal tissue function
B Ninib, P Dariusz, MS Kowalczyk, K Youmna, S Nicolas, G Karin, ...
bioRxiv, 556845, 2019
2019
A decade of systems biology
HY Chuang, M Hofree, T Ideker
Annual review of cell and developmental biology 26 (1), 721-744, 2010
4242010
A distinct transcriptional program in human CAR T cells bearing the 4-1BB signaling domain revealed by scRNA-seq
AC Boroughs, RC Larson, ND Marjanovic, K Gosik, AP Castano, ...
Molecular Therapy 28 (12), 2577-2592, 2020
672020
A highly plastic cell state emerges during lung adenocarcinoma evolution
JE Chan, ND Marjanovic, M Hofree, D Canner, K Wu, G Hartmann, ...
Cancer Research 80 (16_Supplement), 1511-1511, 2020
2020
A joint atlas of single-cell and bulk RNA-seq in metastatic breast cancer allows inference of oncogenic and drug-resistant transcriptional programs in malignant cells and the …
O Cohen, D Abravanel, M Slyper, J Klughammer, J Jane-Valbuena, ...
CANCER RESEARCH 80 (4), 2020
2020
A platinum-resistant subtype of high-grade serous ovarian cancer identified by a network of somatic mutations.
JP Shen, A Bojorquez-Gomez, J Huang, M Hofree, K Kurnit, K Klepper, ...
Journal of Clinical Oncology 35 (15_suppl), 5561-5561, 2017
2017
A single-cell and single-nucleus RNA-Seq toolbox for fresh and frozen human tumors
M Slyper, CBM Porter, O Ashenberg, J Waldman, E Drokhlyansky, ...
Nature medicine 26 (5), 792-802, 2020
4662020
Abstract A14: Network-based stratification: Combining genome-scale somatic mutation profiles with genetic interaction networks to identify clinically relevant subtypes in high …
M Hofree, JP Shen, H Carter, A Gross, T Ideker
Clinical Cancer Research 19 (19_Supplement), A14-A14, 2013
2013
Abstract AP23: A PLATINUM–RESISTANT SUBTYPE OF HIGH–GRADE SEROUS OVARIAN CANCER IDENTIFIED BY A NETWORK OF SOMATIC MUTATIONS
JP Shen, A Bojorquez-Gomez, J Huang, M Hofree, K Klepper, A Beckett, ...
Clinical Cancer Research 23 (11_Supplement), AP23-AP23, 2017
2017
Abstract AS02: Network-based stratification: combining genome-scale somatic mutation profiles with genetic interaction networks to identify clinically relevant subtypes in high …
JP Shen, M Hofree, A Bojorquez-Gomez, C Saenz, T Ideker
Clinical Cancer Research 21 (16_Supplement), AS02-AS02, 2015
2015
Abstract GS6-05: A joint atlas of single-cell and bulk RNA-seq in metastatic breast cancer allows inference of oncogenic and drug-resistant transcriptional programs in …
O Cohen, D Abravanel, M Slyper, J Klughammer, J Jane-Valbuena, ...
Cancer Research 80 (4_Supplement), GS6-05-GS6-05, 2020
2020
Abstract IA34: Targeting cellular heterogeneity in lung adenocarcinoma
N Marjanovic, M Hofree, D Canner, M Trakala, K Wu, O Smith, J Kim, ...
Clinical Cancer Research 24 (17_Supplement), IA34-IA34, 2018
2018
Abstract PR05: Loss of PRC2 or KMT2D-COMPASS generates two quasi-mesenchymal cell states with distinct metastatic abilities
Y Zhang, JL Donaher, S Das, X Li, F Reinhardt, JA Krall, AW Lambert, ...
Cancer Research 80 (23_Supplement), PR05-PR05, 2020
2020
Acquired stemness by luminal cells
W Karthaus, M Hofree, D Choi, EL Linton, M Turkekul, A Bejnood, ...
Cancer Research 80 (16_Supplement), 5722-5722, 2020
2020
Analysis of genomic variants via gene networks
M Hofree
University of California, San Diego, 2014
2014
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