A method to identify somatic mutations from tumor samples in the absence of matched normal tissue L Yao, P Lal, LT Fang, J Lee, J Palma, A Rosenthal, B Hinzmann, ... Cancer Research 78 (13_Supplement), 5293-5293, 2018 | 3 | 2018 |
Abstract LB-213: ecTMB: A robust method to estimate and classify tumor mutational burden L Yao, M Mohiyuddin, H Lam Cancer Research 79 (13_Supplement), LB-213-LB-213, 2019 | | 2019 |
Biomarker Panels for Guiding Dysregulated Host Response Therapy DA Rey, LM Teixeira, HY Lam, BY Lau, L Yao US Patent App. 17/766,018, 2022 | | 2022 |
Cell type-specific binding patterns reveal that TCF7L2 can be tethered to the genome by association with GATA3 S Frietze, R Wang, L Yao, YG Tak, Z Ye, M Gaddis, H Witt, PJ Farnham, ... Genome biology 13, 1-18, 2012 | 127 | 2012 |
Concordance of Genomic Alterations by Next Generation Sequencing (NGS) in Tumor Tissue versus Cell-Free DNA in Stage I-IV NSCLC Y Jiang, H Adams, L Yao, S Yaung, F Fuhlbrueck, S Froehler, L Fang, ... JOURNAL OF MOLECULAR DIAGNOSTICS 19 (6), 1038-1039, 2017 | 1 | 2017 |
Concordance of genomic alterations by next-generation sequencing in tumor tissue versus cell-free DNA in stage I–IV non–small cell lung cancer J Jiang, HP Adams, L Yao, S Yaung, P Lal, A Balasubramanyam, ... The Journal of Molecular Diagnostics 22 (2), 228-235, 2020 | 43 | 2020 |
Concordance of genomic single-nucleotide variations (SNV) by next-generation sequencing (NGS) in paired tumor tissue and plasma in colorectal cancer (CRC) P Lal, J Lee, HP Adams, L Yao, F Fuhlbrück1, S Yaung, S McNamara, ... Cancer Research 78 (13_Supplement), 2960-2960, 2018 | | 2018 |
Correlation of pre-and post-induction plasma mutant allele fraction with progression-free survival (PFS) in STEAM, a prospective, randomized, multicenter study in metastatic … JJ Lee, JF Palma, L Yao, AF Lovejoy, S Yaung, D Zhang, ... Journal of Clinical Oncology 35 (15_suppl), e15118-e15118, 2017 | 1 | 2017 |
Demystifying the secret mission of enhancers: linking distal regulatory elements to target genes L Yao, BP Berman, PJ Farnham Critical reviews in biochemistry and molecular biology 50 (6), 550-573, 2015 | 100 | 2015 |
Disease monitoring using post-induction circulating tumor DNA analysis following first-line therapy in patients with metastatic colorectal cancer X Max Ma, JC Bendell, HI Hurwitz, C Ju, JJ Lee, A Lovejoy, C Mancao, ... Clinical Cancer Research 26 (15), 4010-4017, 2020 | 28 | 2020 |
Early prediction of clinical outcomes in resected stage II and III colorectal cancer (CRC) through deep sequencing of circulating tumor DNA (ctDNA). M Diehn, AA Alizadeh, HP Adams, JJ Lee, S Klassen, JF Palma, ... Journal of Clinical Oncology 35 (15_suppl), 3591-3591, 2017 | 33 | 2017 |
ecTMB: a robust method to estimate and classify tumor mutational burden L Yao, Y Fu, M Mohiyuddin, HYK Lam Scientific reports 10 (1), 4983, 2020 | 21 | 2020 |
Effects on the transcriptome upon deletion of a distal element cannot be predicted by the size of the H3K27Ac peak in human cells YG Tak, Y Hung, L Yao, MR Grimmer, A Do, MS Bhakta, H O'Geen, ... Nucleic acids research 44 (9), 4123-4133, 2016 | 40 | 2016 |
ELMER v. 2: an R/Bioconductor package to reconstruct gene regulatory networks from DNA methylation and transcriptome profiles TC Silva, SG Coetzee, N Gull, L Yao, DJ Hazelett, H Noushmehr, DC Lin, ... Bioinformatics 35 (11), 1974-1977, 2019 | 101 | 2019 |
Enhancer Linking by Methylation/Expression Relationships with the R package ELMER version 2 T Chedraoui Silva, SG Coetzee, L Yao, DJ Hazelett, H Noushmehr, ... BioRxiv, 148726, 2017 | 5 | 2017 |
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ... Nature biotechnology 39 (9), 1151-1160, 2021 | 44 | 2021 |
Establishing reference samples for detection of somatic mutations and germline variants with NGS technologies LT Fang, B Zhu, Y Zhao, W Chen, Z Yang, L Kerrigan, K Langenbach, ... bioRxiv, 625624, 2019 | 8 | 2019 |
Evaluation of clinical outcomes by analysis of mutations in tumor tissue and circulating plasma DNA using next-generation sequencing (NGS) from STEAM, a prospective, randomized … JJ Lee, JF Palma, L Yao, AF Lovejoy, S Yaung, D Zhang, ... Journal of Clinical Oncology 35 (15_suppl), 11510-11510, 2017 | | 2017 |
Functional annotation of colon cancer risk SNPs L Yao, YG Tak, BP Berman, PJ Farnham Nature communications 5 (1), 5114, 2014 | 126 | 2014 |
Gene expression scoring of immune activity levels for precision use of hydrocortisone in vasodilatory shock L Yao, DA Rey, L Bulgarelli, R Kast, J Osborn, E Van Ark, LT Fang, B Lau, ... Shock 57 (3), 384-391, 2022 | 4 | 2022 |