| Agricultural freshwater pond supports diverse and dynamic bacterial and viral populations J Chopyk, S Allard, DJ Nasko, A Bui, EF Mongodin, AR Sapkota Frontiers in microbiology 9, 792, 2018 | 41 | 2018 |
| Aseptic barriers allow a clean contact for contaminated stethoscope diaphragms R Vasudevan, JH Shin, J Chopyk, WF Peacock, FJ Torriani, AS Maisel, ... Mayo Clinic Proceedings: Innovations, Quality & Outcomes 4 (1), 21-30, 2020 | 19 | 2020 |
| Bacterial communities change during ICU renovations J Chopyk, K Akrami, T Bavly, JH Shin, LK Schwanemann, M Ly, R Kalia, ... | | 2020 |
| Bacteriophage and viral ecology in the “Omics Age” J Chopyk, DJ Nasko, EG Sakowski Studies in Viral Ecology, 49-87, 2021 | 2 | 2021 |
| Bacteriophage-Mediated Perturbation of Defined Bacterial Communities in an In Vitro Model of the Human Gut H Attai, J Wilde, R Liu, J Chopyk, AG Garcia, E Allen-Vercoe, D Pride Microbiology Spectrum 10 (3), e01135-22, 2022 | 10 | 2022 |
| Benchmarking urine storage and collection conditions for evaluating the female urinary microbiome CE Jung, J Chopyk, JH Shin, ES Lukacz, L Brubaker, LK Schwanemann, ... Scientific reports 9 (1), 13409, 2019 | 32 | 2019 |
| Characterization of SARS-CoV-2 distribution and microbial succession in a clinical microbiology testing facility during the SARS-CoV-2 pandemic GP Sah, G Kovalick, J Chopyk, P Kuo, L Huang, P Ghatbale, P Das, ... Microbiology spectrum 11 (2), e04509-22, 2023 | | 2023 |
| Common antibiotics, azithromycin and amoxicillin, affect gut metagenomics within a household J Chopyk, AG Cobián Güemes, C Ramirez-Sanchez, H Attai, M Ly, ... BMC microbiology 23 (1), 206, 2023 | 3 | 2023 |
| Comparative metagenomic analysis of microbial taxonomic and functional variations in untreated surface and reclaimed waters used in irrigation applications J Chopyk, DJ Nasko, S Allard, A Bui, T Treangen, M Pop, EF Mongodin, ... Water Research 169, 115250, 2020 | 30 | 2020 |
| Compositional differences in the oral microbiome of e-cigarette users J Chopyk, CM Bojanowski, J Shin, A Moshensky, AL Fuentes, SS Bonde, ... Frontiers in Microbiology 12, 599664, 2021 | 38 | 2021 |
| Counts and sequences, observations that continue to change our understanding of viruses in nature KE Wommack, DJ Nasko, J Chopyk, EG Sakowski Journal of Microbiology 53, 181-192, 2015 | 82 | 2015 |
| Creek to Table–Investigating the Movement of Fecal Indicators, Bacterial Pathogens, and Total Bacterial Communities through Creek Water Irrigation of Kale and Radishes: A … S Allard, MT Callahan, A Bui, AMC Ferelli, J Chopyk, S Micallef, ... IAFP 2018 Annual Meeting, 2018 | | 2018 |
| Creek to table: tracking fecal indicator bacteria, bacterial pathogens, and total bacterial communities from irrigation water to kale and radish crops SM Allard, MT Callahan, A Bui, AMC Ferelli, J Chopyk, S Chattopadhyay, ... Science of the Total Environment 666, 461-471, 2019 | 41 | 2019 |
| Current progress and future opportunities in applications of bioinformatics for biodefense and pathogen detection: report from the Winter Mid-Atlantic Microbiome Meet-up … JS Meisel, DJ Nasko, B Brubach, V Cepeda-Espinoza, J Chopyk, ... Microbiome 6, 1-10, 2018 | 12 | 2018 |
| Current state of and future opportunities for prediction in microbiome research: report from the Mid-Atlantic Microbiome Meet-up in Baltimore on 9 January 2019 E Sakowski, G Uritskiy, R Cooper, M Gomes, MR McLaren, JS Meisel, ... Msystems 4 (5), 10.1128/msystems. 00392-19, 2019 | 9 | 2019 |
| Diversity, Dynamics, & Dissemination of Microbial Communities in Reclaimed and Untreated Surface Waters Used for Agricultural Irrigation J Chopyk University of Maryland, College Park, 2019 | 1 | 2019 |
| Family A DNA polymerase phylogeny uncovers diversity and replication gene organization in the virioplankton DJ Nasko, J Chopyk, EG Sakowski, BD Ferrell, SW Polson, KE Wommack Frontiers in microbiology 9, 3053, 2018 | 24 | 2018 |
| Fecal viral community responses to high-fat diet in mice A Schulfer, TM Santiago-Rodriguez, M Ly, JM Borin, J Chopyk, MJ Blaser, ... MSphere 5 (1), 10.1128/msphere. 00833-19, 2020 | 47 | 2020 |
| Fecal Viral Community Responses to High-Fat Diet in Mice. mSphere 2020, 5, e00833-19 A Schulfer, TM Santiago-Rodriguez, M Ly, JM Borin, J Chopyk, MJ Blaser, ... Article PubMed PubMed Central, 0 | 8 | |
| Fecal virome transplantation is sufficient to alter fecal microbiota and drive lean and obese body phenotypes in mice JM Borin, R Liu, Y Wang, TC Wu, J Chopyk, L Huang, P Kuo, C Ghose, ... Gut Microbes 15 (1), 2236750, 2023 | 16 | 2023 |
