Accelerating MM/PBSA calculation of protein-ligand binding on graphics processing units R Qi, A Luo, H Wei, R Luo ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019 | | 2019 |
Acceleration of linear finite-difference Poisson–Boltzmann methods on graphics processing units R Qi, WM Botello-Smith, R Luo Journal of chemical theory and computation 13 (7), 3378-3387, 2017 | 16 | 2017 |
AMBER 2017, 2017 DA Case, DS Cerutti, TE Cheatham III, TA Darden, RE Duke, TJ Giese, ... San Francisco: University of California, 0 | 15 | |
AMBER 2018 TA Darden, RE Duke, D Ghoreishi, MK Gilson, H Gohlke, AW Goetz, ... University of California, San Francisco, 2018 | 50 | 2018 |
AMBER 2018 DAC IYB-S, SR Brozell, DS Cerutti, T Cheatham III, V Cruzeiro, T Darden, ... University of California, San Francisco, 2018 | 13 | 2018 |
AMBER 2018; 2018 DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ... University of California, San Francisco, 2018 | 114 | 2018 |
Amber 2019, 2019 D Case, I Ben-Shalom, S Brozell, D Cerutti, T Cheatham, V Cruzeiro III, ... University of California, San Francisco, 0 | 9 | |
AMBER 2020 TA Darden, RE Duke, G Giambasu, MK Gilson, H Gohlke, AW Goetz, ... University of California: San Francisco, 2020 | 20 | 2020 |
Amber 2020, 2020 DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, T Cheatham, ... San Francisco: University of California.[Google Scholar], 2019 | 34 | 2019 |
Amber 2021 DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ... University of California, San Francisco, 2021 | 5423 | 2021 |
AMBER 22 reference manual DA Case, RE Duke, RC Walker, NR Skrynnikov, TE Cheatham III, ... University of California, San Francisco, United States-California, 2022 | 32 | 2022 |
AMBER16 and AmberTools17 DA Case, DS Cerutti, TE Cheatham, TA Darden, RE Duke, TJ Giese, ... University of California, San Francisco, 2017 | 27 | 2017 |
AMBER17. 2017 DA Case, DS Cerutti, TE Cheatham III, TA Darden, RE Duke, TJ Giese, ... San Fr. Univ. Calif, 2018 | 13 | 2018 |
AmberTools DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ... Journal of chemical information and modeling 63 (20), 6183-6191, 2023 | 194 | 2023 |
An efficient second‐order poisson–boltzmann method H Wei, R Luo, R Qi Journal of computational chemistry 40 (12), 1257-1269, 2019 | 8 | 2019 |
Aβ “stretching-and-packing” cross-seeding mechanism can trigger tau protein aggregation R Qi, Y Luo, G Wei, R Nussinov, B Ma The Journal of Physical Chemistry Letters 6 (16), 3276-3282, 2015 | 51 | 2015 |
Calculating protein-ligand binding affinities with MM/PBSA: Improvement and extension R Qi, C Wang, L Xiao, W Botello-Smith, DA Greene, R Luo ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017 | | 2017 |
Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer R Qi, Y Luo, B Ma, R Nussinov, G Wei Biomacromolecules 15 (1), 122-131, 2014 | 86 | 2014 |
Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization C Zhan, R Qi, G Wei, E Guven-Maiorov, R Nussinov, B Ma Protein Engineering, Design and Selection 29 (9), 347-354, 2016 | 21 | 2016 |
Conformational stability and dynamics of the cancer-associated isoform Δ133p53β are modulated by p53 peptides and p53-specific DNA J Lei, R Qi, Y Tang, W Wang, G Wei, R Nussinov, B Ma The FASEB Journal 33 (3), 4225, 2019 | 30 | 2019 |