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Ruxi Qi
Ruxi Qi
在 uci.edu 的电子邮件经过验证
标题
引用次数
年份
Accelerating MM/PBSA calculation of protein-ligand binding on graphics processing units
R Qi, A Luo, H Wei, R Luo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 258, 2019
2019
Acceleration of linear finite-difference Poisson–Boltzmann methods on graphics processing units
R Qi, WM Botello-Smith, R Luo
Journal of chemical theory and computation 13 (7), 3378-3387, 2017
162017
AMBER 2017, 2017
DA Case, DS Cerutti, TE Cheatham III, TA Darden, RE Duke, TJ Giese, ...
San Francisco: University of California, 0
15
AMBER 2018
TA Darden, RE Duke, D Ghoreishi, MK Gilson, H Gohlke, AW Goetz, ...
University of California, San Francisco, 2018
502018
AMBER 2018
DAC IYB-S, SR Brozell, DS Cerutti, T Cheatham III, V Cruzeiro, T Darden, ...
University of California, San Francisco, 2018
132018
AMBER 2018; 2018
DA Case, IY Ben-Shalom, SR Brozell, DS Cerutti, TE Cheatham III, ...
University of California, San Francisco, 2018
1142018
Amber 2019, 2019
D Case, I Ben-Shalom, S Brozell, D Cerutti, T Cheatham, V Cruzeiro III, ...
University of California, San Francisco, 0
9
AMBER 2020
TA Darden, RE Duke, G Giambasu, MK Gilson, H Gohlke, AW Goetz, ...
University of California: San Francisco, 2020
202020
Amber 2020, 2020
DA Case, K Belfon, IY Ben-Shalom, SR Brozell, DS Cerutti, T Cheatham, ...
San Francisco: University of California.[Google Scholar], 2019
342019
Amber 2021
DA Case, HM Aktulga, K Belfon, I Ben-Shalom, SR Brozell, DS Cerutti, ...
University of California, San Francisco, 2021
54232021
AMBER 22 reference manual
DA Case, RE Duke, RC Walker, NR Skrynnikov, TE Cheatham III, ...
University of California, San Francisco, United States-California, 2022
322022
AMBER16 and AmberTools17
DA Case, DS Cerutti, TE Cheatham, TA Darden, RE Duke, TJ Giese, ...
University of California, San Francisco, 2017
272017
AMBER17. 2017
DA Case, DS Cerutti, TE Cheatham III, TA Darden, RE Duke, TJ Giese, ...
San Fr. Univ. Calif, 2018
132018
AmberTools
DA Case, HM Aktulga, K Belfon, DS Cerutti, GA Cisneros, VWD Cruzeiro, ...
Journal of chemical information and modeling 63 (20), 6183-6191, 2023
1942023
An efficient second‐order poisson–boltzmann method
H Wei, R Luo, R Qi
Journal of computational chemistry 40 (12), 1257-1269, 2019
82019
Aβ “stretching-and-packing” cross-seeding mechanism can trigger tau protein aggregation
R Qi, Y Luo, G Wei, R Nussinov, B Ma
The Journal of Physical Chemistry Letters 6 (16), 3276-3282, 2015
512015
Calculating protein-ligand binding affinities with MM/PBSA: Improvement and extension
R Qi, C Wang, L Xiao, W Botello-Smith, DA Greene, R Luo
ABSTRACTS OF PAPERS OF THE AMERICAN CHEMICAL SOCIETY 254, 2017
2017
Conformational distribution and α-helix to β-sheet transition of human amylin fragment dimer
R Qi, Y Luo, B Ma, R Nussinov, G Wei
Biomacromolecules 15 (1), 122-131, 2014
862014
Conformational dynamics of cancer-associated MyD88-TIR domain mutant L252P (L265P) allosterically tilts the landscape toward homo-dimerization
C Zhan, R Qi, G Wei, E Guven-Maiorov, R Nussinov, B Ma
Protein Engineering, Design and Selection 29 (9), 347-354, 2016
212016
Conformational stability and dynamics of the cancer-associated isoform Δ133p53β are modulated by p53 peptides and p53-specific DNA
J Lei, R Qi, Y Tang, W Wang, G Wei, R Nussinov, B Ma
The FASEB Journal 33 (3), 4225, 2019
302019
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