| A 3-way hybrid approach to generate a new high-quality chimpanzee reference genome (Pan_tro_3. 0) LFK Kuderna, C Tomlinson, LDW Hillier, A Tran, IT Fiddes, J Armstrong, ... Gigascience 6 (11), gix098, 2017 | 18 | 2017 |
| A comprehensive overview on Equus caballus segmental duplications N Lorusso, CR Catacchio, FM Calabrese, J Huddleston, EE Eichler, ... MOLECULAR CYTOGENETICS 10, 2017 | | 2017 |
| A evolução e a diversidade populacional de duplicações segmentares específicas para o ser humano MY Dennis, L Harshman, BJ Nelson, O Penn, S Cantsilieris, J Huddleston, ... Ecologia da natureza e evolução, 2017 | | 2017 |
| A slipped-CAG DNA-binding small molecule induces trinucleotide-repeat contractions in vivo M Nakamori, GB Panigrahi, S Lanni, T Gall-Duncan, H Hayakawa, ... Nature genetics 52 (2), 146-159, 2020 | 128 | 2020 |
| Age-dependent heterogeneity in the antigenic effects of mutations to influenza hemagglutinin FC Welsh, RT Eguia, JM Lee, HK Haddox, J Galloway, NVV Chau, ... bioRxiv, 2023 | 4 | 2023 |
| An evolutionary driver of interspersed segmental duplications in primates S Cantsilieris, SM Sunkin, ME Johnson, F Anaclerio, J Huddleston, ... Genome biology 21, 1-35, 2020 | 23 | 2020 |
| An incomplete understanding of human genetic variation J Huddleston, EE Eichler Genetics 202 (4), 1251-1254, 2016 | 101 | 2016 |
| An integrated map of structural variation in 2,504 human genomes PH Sudmant, T Rausch, EJ Gardner, RE Handsaker, A Abyzov, ... Nature 526 (7571), 75-81, 2015 | 2393 | 2015 |
| Antigenic drift and subtype interference shape A (H3N2) epidemic dynamics in the United States AC Perofsky, J Huddleston, C Hansen, JR Barnes, T Rowe, X Xu, ... medRxiv, 2023.10. 02.23296453, 2023 | 1 | 2023 |
| Augur: a bioinformatics toolkit for phylogenetic analyses of human pathogens J Huddleston, J Hadfield, TR Sibley, J Lee, K Fay, M Ilcisin, E Harkins, ... Journal of open source software 6 (57), 2021 | 130 | 2021 |
| Author response: Integrating genotypes and phenotypes improves long-term forecasts of seasonal influenza A/H3N2 evolution J Huddleston, JR Barnes, T Rowe, X Xu, R Kondor, DE Wentworth, ... | | |
| Bovine NK-lysin: Copy number variation and functional diversification J Chen, J Huddleston, RM Buckley, M Malig, SD Lawhon, LC Skow, ... Proceedings of the National Academy of Sciences 112 (52), E7223-E7229, 2015 | 44 | 2015 |
| Complete haplotype sequence of the human immunoglobulin heavy-chain variable, diversity, and joining genes and characterization of allelic and copy-number variation CT Watson, KM Steinberg, J Huddleston, RL Warren, M Malig, J Schein, ... The American Journal of Human Genetics 92 (4), 530-546, 2013 | 251 | 2013 |
| Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition AJ Greaney, TN Starr, P Gilchuk, SJ Zost, E Binshtein, AN Loes, SK Hilton, ... Cell host & microbe 29 (1), 44-57. e9, 2021 | 1078 | 2021 |
| Complete mapping of mutations to the SARS-CoV-2 spike receptor-binding domain that escape antibody recognition. bioRxiv, 2020.09. 10.292078 AJ Greaney, TN Starr, P Gilchuk, SJ Zost, E Binshtein, AN Loes, SK Hilton, ... | 2 | 2020 |
| Complex Relationships between Chromatin Accessibility, Sequence Divergence, and Gene Expression in Arabidopsis thaliana CM Alexandre, JR Urton, K Jean-Baptiste, J Huddleston, MW Dorrity, ... Molecular Biology and Evolution 35 (4), 837-854, 2018 | 36 | 2018 |
| Corrigendum: Discovery and genotyping of structural variation from long-read haploid genome sequence data J Huddleston, MJP Chaisson, KM Steinberg, W Warren, K Hoekzema, ... Genome Research 28 (1), 144, 2018 | 3 | 2018 |
| Cryptic transmission of SARS-CoV-2 in Washington state T Bedford, AL Greninger, P Roychoudhury, LM Starita, M Famulare, ... Science 370 (6516), 571-575, 2020 | 298 | 2020 |
| Deep mutational scanning of hemagglutinin helps predict evolutionary fates of human H3N2 influenza variants JM Lee, J Huddleston, MB Doud, KA Hooper, NC Wu, T Bedford, ... Proceedings of the National Academy of Sciences 115 (35), E8276-E8285, 2018 | 175 | 2018 |
| denovo-db: a compendium of human de novo variants TN Turner, Q Yi, N Krumm, J Huddleston, K Hoekzema, HA F. Stessman, ... Nucleic acids research 45 (D1), D804-D811, 2017 | 136 | 2017 |
