A graph-based genome and pan-genome variation of the model plant Setaria Q He, S Tang, H Zhi, J Chen, J Zhang, H Liang, O Alam, H Li, H Zhang, ... Nature Genetics, 1-11, 2023 | 53 | 2023 |
A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes D Gao, J Chen, M Chen, BC Meyers, S Jackson PloS one 7 (2), e32010, 2012 | 62 | 2012 |
A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth N Liu, Y Xu, Q Li, Y Cao, D Yang, S Liu, X Wang, Y Mi, Y Liu, C Ding, ... Cell Host & Microbe 30 (8), 1124-1138. e8, 2022 | 44 | 2022 |
A snapshot of the emerging tomato genome sequence LA Mueller, RK Lankhorst, SD Tanksley, JJ Giovannoni, R White, ... The Plant Genome 2 (1), 78-92, 2009 | 103 | 2009 |
Accumulation of DNA damage alters microRNA gene transcription in Arabidopsis thaliana J Du, Y Liu, L Lu, J Shi, L Xu, Q Li, X Cheng, J Chen, X Zhang BMC Plant Biology 22 (1), 1-13, 2022 | 2 | 2022 |
Assessing genome assembly quality using the LTR Assembly Index (LAI) S Ou, J Chen, N Jiang Nucleic acids research 46 (21), e126-e126, 2018 | 504 | 2018 |
BAK1 is not a target of the Pseudomonas syringae effector AvrPto T Xiang, N Zong, J Zhang, J Chen, M Chen, JM Zhou Molecular plant-microbe interactions 24 (1), 100-107, 2011 | 103 | 2011 |
Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome Y Sun, Y Liu, J Shi, L Wang, C Liang, J Yang, J Chen, M Chen The Plant Journal 113 (4), 787-801, 2023 | 6 | 2023 |
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes F Lu, JSS Ammiraju, A Sanyal, S Zhang, R Song, J Chen, G Li, Y Sui, ... Proceedings of the National Academy of Sciences 106 (6), 2071-2076, 2009 | 140 | 2009 |
Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes L Yang, T Liu, B Li, Y Sui, J Chen, J Shi, RA Wing, M Chen PloS one 7 (11), e50236, 2012 | 21 | 2012 |
Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set JSS Ammiraju, F Lu, A Sanyal, Y Yu, X Song, N Jiang, AC Pontaroli, ... The Plant Cell 20 (12), 3191-3209, 2008 | 145 | 2008 |
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population J Chen, L Lu, SMC Robb, M Collin, Y Okumoto, JE Stajich, SR Wessler Proceedings of the National Academy of Sciences 117 (42), 26288-26297, 2020 | 27 | 2020 |
Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport J Qi, Q Qian, Q Bu, S Li, Q Chen, J Sun, W Liang, Y Zhou, C Chu, X Li, ... Plant physiology 147 (4), 1947-1959, 2008 | 303 | 2008 |
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum A Sanyal, JSS Ammiraju, F Lu, Y Yu, T Rambo, J Currie, K Kollura, ... Molecular biology and evolution 27 (11), 2487-2506, 2010 | 35 | 2010 |
Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen, Y Liao, W Zhang, ... Nature Genetics, 1-12, 2023 | 12 | 2023 |
Population genetics of foxtail millet and its wild ancestor C Wang, J Chen, H Zhi, L Yang, W Li, Y Wang, H Li, B Zhao, M Chen, ... BMC genetics 11 (1), 90, 2010 | 63 | 2010 |
PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq Y Gao, H Wang, H Zhang, Y Wang, J Chen, L Gu Bioinformatics 34 (9), 1580-1582, 2018 | 36 | 2018 |
RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing J Chen, TR Wrightsman, SR Wessler, JE Stajich PeerJ 5, e2942, 2017 | 34 | 2017 |
Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation F Li, W Liu, J Tang, J Chen, H Tong, B Hu, C Li, J Fang, M Chen, C Chu Cell research 20 (7), 838, 2010 | 199 | 2010 |
SARS-CoV-2 RNAs are processed into 22-nt vsRNAs in Vero cells Y Liu, J Rao, Y Mi, L Chen, L Feng, Q Li, J Geng, X Yang, X Zhan, L Ren, ... Frontiers in Immunology 13, 2022 | 1 | 2022 |