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jinfeng chen
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A graph-based genome and pan-genome variation of the model plant Setaria
Q He, S Tang, H Zhi, J Chen, J Zhang, H Liang, O Alam, H Li, H Zhang, ...
Nature Genetics, 1-11, 2023
532023
A highly conserved, small LTR retrotransposon that preferentially targets genes in grass genomes
D Gao, J Chen, M Chen, BC Meyers, S Jackson
PloS one 7 (2), e32010, 2012
622012
A lncRNA fine-tunes salicylic acid biosynthesis to balance plant immunity and growth
N Liu, Y Xu, Q Li, Y Cao, D Yang, S Liu, X Wang, Y Mi, Y Liu, C Ding, ...
Cell Host & Microbe 30 (8), 1124-1138. e8, 2022
442022
A snapshot of the emerging tomato genome sequence
LA Mueller, RK Lankhorst, SD Tanksley, JJ Giovannoni, R White, ...
The Plant Genome 2 (1), 78-92, 2009
1032009
Accumulation of DNA damage alters microRNA gene transcription in Arabidopsis thaliana
J Du, Y Liu, L Lu, J Shi, L Xu, Q Li, X Cheng, J Chen, X Zhang
BMC Plant Biology 22 (1), 1-13, 2022
22022
Assessing genome assembly quality using the LTR Assembly Index (LAI)
S Ou, J Chen, N Jiang
Nucleic acids research 46 (21), e126-e126, 2018
5042018
BAK1 is not a target of the Pseudomonas syringae effector AvrPto
T Xiang, N Zong, J Zhang, J Chen, M Chen, JM Zhou
Molecular plant-microbe interactions 24 (1), 100-107, 2011
1032011
Biased mutations and gene losses underlying diploidization of the tetraploid broomcorn millet genome
Y Sun, Y Liu, J Shi, L Wang, C Liang, J Yang, J Chen, M Chen
The Plant Journal 113 (4), 787-801, 2023
62023
Comparative sequence analysis of MONOCULM1-orthologous regions in 14 Oryza genomes
F Lu, JSS Ammiraju, A Sanyal, S Zhang, R Song, J Chen, G Li, Y Sui, ...
Proceedings of the National Academy of Sciences 106 (6), 2071-2076, 2009
1402009
Comparative sequence analysis of the Ghd7 orthologous regions revealed movement of Ghd7 in the grass genomes
L Yang, T Liu, B Li, Y Sui, J Chen, J Shi, RA Wing, M Chen
PloS one 7 (11), e50236, 2012
212012
Dynamic evolution of Oryza genomes is revealed by comparative genomic analysis of a genus-wide vertical data set
JSS Ammiraju, F Lu, A Sanyal, Y Yu, X Song, N Jiang, AC Pontaroli, ...
The Plant Cell 20 (12), 3191-3209, 2008
1452008
Genomic diversity generated by a transposable element burst in a rice recombinant inbred population
J Chen, L Lu, SMC Robb, M Collin, Y Okumoto, JE Stajich, SR Wessler
Proceedings of the National Academy of Sciences 117 (42), 26288-26297, 2020
272020
Mutation of the rice Narrow leaf1 gene, which encodes a novel protein, affects vein patterning and polar auxin transport
J Qi, Q Qian, Q Bu, S Li, Q Chen, J Sun, W Liang, Y Zhou, C Chu, X Li, ...
Plant physiology 147 (4), 1947-1959, 2008
3032008
Orthologous comparisons of the Hd1 region across genera reveal Hd1 gene lability within diploid Oryza species and disruptions to microsynteny in Sorghum
A Sanyal, JSS Ammiraju, F Lu, Y Yu, T Rambo, J Currie, K Kollura, ...
Molecular biology and evolution 27 (11), 2487-2506, 2010
352010
Pangenome analysis reveals genomic variations associated with domestication traits in broomcorn millet
J Chen, Y Liu, M Liu, W Guo, Y Wang, Q He, W Chen, Y Liao, W Zhang, ...
Nature Genetics, 1-12, 2023
122023
Population genetics of foxtail millet and its wild ancestor
C Wang, J Chen, H Zhi, L Yang, W Li, Y Wang, H Li, B Zhao, M Chen, ...
BMC genetics 11 (1), 90, 2010
632010
PRAPI: post-transcriptional regulation analysis pipeline for Iso-Seq
Y Gao, H Wang, H Zhang, Y Wang, J Chen, L Gu
Bioinformatics 34 (9), 1580-1582, 2018
362018
RelocaTE2: a high resolution transposable element insertion site mapping tool for population resequencing
J Chen, TR Wrightsman, SR Wessler, JE Stajich
PeerJ 5, e2942, 2017
342017
Rice DENSE AND ERECT PANICLE 2 is essential for determining panicle outgrowth and elongation
F Li, W Liu, J Tang, J Chen, H Tong, B Hu, C Li, J Fang, M Chen, C Chu
Cell research 20 (7), 838, 2010
1992010
SARS-CoV-2 RNAs are processed into 22-nt vsRNAs in Vero cells
Y Liu, J Rao, Y Mi, L Chen, L Feng, Q Li, J Geng, X Yang, X Zhan, L Ren, ...
Frontiers in Immunology 13, 2022
12022
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