SAbDab: the structural antibody database J Dunbar, K Krawczyk, J Leem, T Baker, A Fuchs, G Georges, J Shi, ... Nucleic acids research 42 (D1), D1140-D1146, 2014 | 484 | 2014 |
ABodyBuilder: Automated antibody structure prediction with data–driven accuracy estimation J Leem, J Dunbar, G Georges, J Shi, CM Deane MAbs 8 (7), 1259-1268, 2016 | 210 | 2016 |
SAbPred: a structure-based antibody prediction server J Dunbar, K Krawczyk, J Leem, C Marks, J Nowak, C Regep, G Georges, ... Nucleic acids research 44 (W1), W474-W478, 2016 | 197 | 2016 |
Observed antibody space: a resource for data mining next-generation sequencing of antibody repertoires A Kovaltsuk, J Leem, S Kelm, J Snowden, CM Deane, K Krawczyk The Journal of Immunology 201 (8), 2502-2509, 2018 | 189 | 2018 |
Deciphering the language of antibodies using self-supervised learning J Leem, LS Mitchell, JHR Farmery, J Barton, JD Galson Patterns 3 (7), 2022 | 101 | 2022 |
STCRDab: the structural T-cell receptor database J Leem, SHP de Oliveira, K Krawczyk, CM Deane Nucleic acids research 46 (D1), D406-D412, 2018 | 81 | 2018 |
Comparative analysis of the CDR loops of antigen receptors WK Wong, J Leem, CM Deane Frontiers in immunology 10, 2454, 2019 | 64 | 2019 |
Structurally mapping antibody repertoires K Krawczyk, S Kelm, A Kovaltsuk, JD Galson, D Kelly, J Trück, C Regep, ... Frontiers in immunology 9, 1698, 2018 | 43 | 2018 |
SCALOP: sequence-based antibody canonical loop structure annotation WK Wong, G Georges, F Ros, S Kelm, AP Lewis, B Taddese, J Leem, ... Bioinformatics 35 (10), 1774-1776, 2019 | 26 | 2019 |
Antibody side chain conformations are position‐dependent J Leem, G Georges, J Shi, CM Deane Proteins: Structure, Function, and Bioinformatics 86 (4), 383-392, 2018 | 26 | 2018 |
Trapped platelets activated in ischemia initiate ventricular fibrillation TS Dhanjal, RA Medina, J Leem, JE Clark, R Southworth, MJ Curtis Circulation: Arrhythmia and Electrophysiology 6 (5), 995-1001, 2013 | 17 | 2013 |
AbDiver: a tool to explore the natural antibody landscape to aid therapeutic design J Młokosiewicz, P Deszyński, W Wilman, I Jaszczyszyn, R Ganesan, ... Bioinformatics 38 (9), 2628-2630, 2022 | 15 | 2022 |
ABodyBuilder: Automated antibody structure prediction with data-driven accuracy estimation. MAbs 8, 1259–1268 J Leem, J Dunbar, G Georges, J Shi, CM Deane | 15 | 2016 |
TCRBuilder: multi-state T-cell receptor structure prediction WK Wong, C Marks, J Leem, AP Lewis, J Shi, CM Deane Bioinformatics 36 (11), 3580-3581, 2020 | 13 | 2020 |
Ten simple rules for surviving an interdisciplinary PhD S Demharter, N Pearce, K Beattie, I Frost, J Leem, A Martin, ... PLoS Computational Biology 13 (5), e1005512, 2017 | 11 | 2017 |
Structural modeling of antibody variable regions using deep learning—progress and perspectives on drug discovery I Jaszczyszyn, W Bielska, T Gawlowski, P Dudzic, T Satława, J Kończak, ... Frontiers in Molecular Biosciences 10, 1214424, 2023 | 8 | 2023 |
High-throughput antibody structure modeling and design using abodybuilder J Leem, CM Deane Computational Methods in Protein Evolution, 367-380, 2019 | 5 | 2019 |
Enhancing antibody language models with structural information J Barton, JD Galson, J Leem bioRxiv, 2023.12. 12.569610, 2024 | 3 | 2024 |
Benchmarking and integrating human B-cell receptor genomic and antibody proteomic profiling K Lê Quý, M Chernigovskaya, M Stensland, S Singh, J Leem, S Revale, ... NPJ Systems Biology and Applications 10 (1), 73, 2024 | 2 | 2024 |
Building representation learning models for antibody comprehension J Barton, A Gaspariunas, JD Galson, J Leem Cold Spring Harbor Perspectives in Biology 16 (3), a041462, 2024 | 2 | 2024 |