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| Gastrointestinal surgery for inflammatory bowel disease persistently lowers microbiome and metabolome diversity X Fang, Y Vázquez-Baeza, E Elijah, F Vargas, G Ackermann, ... Inflammatory bowel diseases 27 (5), 603-616, 2021 | 32 | 2021 |
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| A 3000 year record of Caribbean reef urchin communities reveals causes and consequences of long‐term decline in Diadema antillarum KL Cramer, A O’Dea, C Carpenter, RD Norris Ecography 41 (1), 164-173, 2018 | 25 | 2018 |
| Feasibility of using alternative swabs and storage solutions for paired SARS-CoV-2 detection and microbiome analysis in the hospital environment JJ Minich, F Ali, C Marotz, P Belda-Ferre, L Chiang, JP Shaffer, ... Microbiome 9 (1), 1-13, 2021 | 23* | 2021 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... BioTechniques, 2021 | 23 | 2021 |
| Metabolome-informed microbiome analysis refines metadata classifications and reveals unexpected medication transfer in captive cheetahs JM Gauglitz, JT Morton, A Tripathi, S Hansen, M Gaffney, C Carpenter, ... Msystems 5 (2), 10.1128/msystems. 00635-19, 2020 | 14 | 2020 |
| Reply to: caution regarding the specificities of pan-cancer microbial structure GD Sepich-Poore, E Kopylova, Q Zhu, C Carpenter, S Fraraccio, ... bioRxiv, 2023.02. 10.528049, 2023 | 10 | 2023 |
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| Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene, 1-22, 2024 | 2 | 2024 |
| Evidence for microbially-mediated tradeoffs between growth and defense throughout coral evolution HE Epstein, T Brown, AO Akinrinade, R McMinds, FJ Pollock, D Sonett, ... bioRxiv, 2023.04. 26.538152, 2023 | 1 | 2023 |
| Signatures of HIV and Major Depressive Disorder in the Plasma Microbiome BC Taylor, M Sheikh Andalibi, S Wandro, KC Weldon, GD Sepich-Poore, ... Microorganisms 11 (4), 1022, 2023 | 1 | 2023 |
| Class Ib MHC–Mediated Immune Interactions Play a Critical Role in Maintaining Mucosal Homeostasis in the Mammalian Large Intestine S Dasgupta, I Maricic, J Tang, S Wandro, K Weldon, CS Carpenter, ... ImmunoHorizons 5 (12), 953-971, 2021 | 1 | 2021 |
| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (vol 70, pg 149, 2021) J Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... BIOTECHNIQUES 76 (3), 1-1, 2024 | | 2024 |
| Correction: Robustness of cancer microbiome signals over a broad range of methodological variation GD Sepich-Poore, D McDonald, E Kopylova, C Guccione, Q Zhu, G Austin, ... Oncogene 43 (20), 1579, 2024 | | 2024 |
| Swapping Metagenomics Preprocessing Pipeline Components Offers Speed and Sensitivity Increases D Roush, D McDonald, A Gonazlez, JP Shaffer, C Carpenter, M Estaki, ... | | 2022 |
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| A comparison of DNA/RNA extraction protocols for high-throughput sequencing of microbial communities (preprint) JP Shaffer, C Marotz, P Belda-Ferre, C Martino, S Wandro, M Estaki, ... | | 2020 |
