| A draft human pangenome reference WW Liao, M Asri, J Ebler, D Doerr, M Haukness, G Hickey, S Lu, JK Lucas, ... Nature 617 (7960), 312-324, 2023 | 432 | 2023 |
| Pangenome graphs JM Eizenga, AM Novak, JA Sibbesen, S Heumos, A Ghaffaari, G Hickey, ... Annual review of genomics and human genetics 21, 139-162, 2020 | 203 | 2020 |
| Next-generation biology: sequencing and data analysis approaches for non-model organisms RR da Fonseca, A Albrechtsen, GE Themudo, J Ramos-Madrigal, ... Marine Genomics 30, 3-13, 2016 | 201 | 2016 |
| Genotyping structural variants in pangenome graphs using the vg toolkit G Hickey, D Heller, J Monlong, JA Sibbesen, J Sirén, J Eizenga, ... Genome biology 21, 1-17, 2020 | 194 | 2020 |
| Pangenomics enables genotyping of known structural variants in 5202 diverse genomes J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Science 374 (6574), abg8871, 2021 | 181 | 2021 |
| Sequencing and de novo assembly of 150 genomes from Denmark as a population reference L Maretty, JM Jensen, B Petersen, JA Sibbesen, S Liu, P Villesen, L Skov, ... Nature 548 (7665), 87-91, 2017 | 161 | 2017 |
| Bayesian transcriptome assembly L Maretty, JA Sibbesen, A Krogh Genome biology 15 (10), 1-11, 2014 | 105 | 2014 |
| Accurate genotyping across variant classes and lengths using variant graphs JA Sibbesen, L Maretty, Danish Pan-Genome Consortium, A Krogh Nature genetics 50 (7), 1054-1059, 2018 | 69 | 2018 |
| Analysis of 62 hybrid assembled human Y chromosomes exposes rapid structural changes and high rates of gene conversion L Skov, Danish Pan Genome Consortium, MH Schierup PLoS genetics 13 (8), e1006834, 2017 | 39 | 2017 |
| Haplotype-aware pantranscriptome analyses using spliced pangenome graphs JA Sibbesen, JM Eizenga, AM Novak, J Sirén, X Chang, E Garrison, ... Nature Methods, 1-9, 2023 | 32 | 2023 |
| Benchmarking the HLA typing performance of Polysolver and Optitype in 50 Danish parental trios ML Matey-Hernandez, S Brunak, JMG Izarzugaza BMC bioinformatics 19, 1-12, 2018 | 30 | 2018 |
| Genotyping common, large structural variations in 5,202 genomes using pangenomes, the Giraffe mapper, and the vg toolkit J Sirén, J Monlong, X Chang, AM Novak, JM Eizenga, C Markello, ... Biorxiv, 2020.12. 04.412486, 2020 | 25 | 2020 |
| Discovery, genotyping and characterization of structural variation and novel sequence at single nucleotide resolution from de novo genome assemblies on a … S Liu, S Huang, J Rao, W Ye, Genome Denmark Consortium, A Krogh, ... Gigascience 4 (1), s13742-015-0103-4, 2015 | 24 | 2015 |
| Assembly and analysis of 100 full MHC haplotypes from the Danish population JM Jensen, P Villesen, RM Friborg, T Mailund, S Besenbacher, ... Genome research 27 (9), 1597-1607, 2017 | 20 | 2017 |
| A strategy for building and using a human reference pangenome B Llamas, G Narzisi, V Schneider, PA Audano, E Biederstedt, L Blauvelt, ... F1000Research 8 (1751), 1751, 2021 | 16 | 2021 |
| Combined use of Oxford Nanopore and Illumina sequencing yields insights into soybean structural variation biology MA Lemay, JA Sibbesen, D Torkamaneh, J Hamel, RC Levesque, ... BMC biology 20 (1), 1-24, 2022 | 15 | 2022 |
| Coalescent inference using serially sampled, high-throughput sequencing data from intrahost HIV infection K Dialdestoro, JA Sibbesen, L Maretty, J Raghwani, A Gall, P Kellam, ... Genetics 202 (4), 1449-1472, 2016 | 13 | 2016 |
| RNA Sequencing of Trigeminal Ganglia in Rattus Norvegicus after Glyceryl Trinitrate Infusion with Relevance to Migraine S Hougaard Pedersen, L Maretty, R Ramachandran, JA Sibbesen, ... PloS one 11 (5), e0155039, 2016 | 9 | 2016 |
| Probabilistic transcriptome assembly and variant graph genotyping JA Sibbesen University of Copenhagen, Faculty of Science, Department of Biology, 2016 | 1 | 2016 |
| Coalescent inference using serially sampled, high-throughput sequencing data from HIV infected patients K Dialdestoro, JA Sibbesen, L Maretty, J Raghwani, A Gall, P Kellam, ... bioRxiv, 020552, 2015 | | 2015 |
