The double-stranded transcriptome of Escherichia coli M Lybecker, B Zimmermann, I Bilusic, N Tukhtubaeva, R Schroeder Proceedings of the National Academy of Sciences 111 (8), 3134-3139, 2014 | 129 | 2014 |
Genomic SELEX for Hfq-binding RNAs identifies genomic aptamers predominantly in antisense transcripts C Lorenz, T Gesell, B Zimmermann, U Schoeberl, I Bilusic, L Rajkowitsch, ... Nucleic acids research 38 (11), 3794-3808, 2010 | 116 | 2010 |
Monitoring genomic sequences during SELEX using high-throughput sequencing: neutral SELEX B Zimmermann, T Gesell, D Chen, C Lorenz, R Schroeder PloS one 5 (2), e9169, 2010 | 96 | 2010 |
Genomic SELEX: a discovery tool for genomic aptamers B Zimmermann, I Bilusic, C Lorenz, R Schroeder Methods 52 (2), 125-132, 2010 | 88 | 2010 |
Characterization of the piRNA pathway during development of the sea anemone Nematostella vectensis D Praher, B Zimmermann, G Genikhovich, Y Columbus-Shenkar, ... RNA biology 14 (12), 1727-1741, 2017 | 63 | 2017 |
Natural RNA polymerase aptamers regulate transcription in E. coli N Sedlyarova, P Rescheneder, A Magan, N Popitsch, N Rziha, I Bilusic, ... Molecular cell 67 (1), 30-43. e6, 2017 | 50 | 2017 |
Sea anemone genomes reveal ancestral metazoan chromosomal macrosynteny B Zimmermann, JD Montenegro, SMC Robb, WJ Fropf, L Weilguny, S He, ... BioRxiv, 2020.10. 30.359448, 2020 | 49 | 2020 |
Cnidarian-bilaterian comparison reveals the ancestral regulatory logic of the β-catenin dependent axial patterning T Lebedeva, AJ Aman, T Graf, I Niedermoser, B Zimmermann, Y Kraus, ... Nature communications 12 (1), 4032, 2021 | 29 | 2021 |
Emergence of novel cephalopod gene regulation and expression through large-scale genome reorganization H Schmidbaur, A Kawaguchi, T Clarence, X Fu, OP Hoang, ... Nature communications 13 (1), 2172, 2022 | 27 | 2022 |
A cadherin switch marks germ layer formation in the diploblastic sea anemone Nematostella vectensis EA Pukhlyakova, AO Kirillova, YA Kraus, B Zimmermann, U Technau Development 146 (20), dev174623, 2019 | 20 | 2019 |
Conservation and turnover of miRNAs and their highly complementary targets in early branching animals D Praher, B Zimmermann, R Dnyansagar, DJ Miller, A Moya, V Modepalli, ... Proceedings of the Royal Society B 288 (1945), 20203169, 2021 | 18 | 2021 |
Ancient animal genome architecture reflects cell type identities B Zimmermann, NSM Robert, U Technau, O Simakov Nature Ecology & Evolution 3 (9), 1289-1293, 2019 | 17 | 2019 |
Topological structures and syntenic conservation in sea anemone genomes B Zimmermann, JD Montenegro, SMC Robb, WJ Fropf, L Weilguny, S He, ... Nature Communications 14 (1), 8270, 2023 | 16 | 2023 |
An ancestral Wnt–Brachyury feedback loop in axial patterning and recruitment of mesoderm-determining target genes M Schwaiger, C Andrikou, R Dnyansagar, PF Murguia, P Paganos, ... Nature Ecology & Evolution 6 (12), 1921-1939, 2022 | 16 | 2022 |
Muscle cell-type diversification is driven by bHLH transcription factor expansion and extensive effector gene duplications AG Cole, SM Jahnel, S Kaul, J Steger, J Hagauer, A Denner, PF Murguia, ... Nature Communications 14 (1), 1747, 2023 | 14 | 2023 |
Muscle cell type diversification facilitated by extensive gene duplications AG Cole, S Kaul, SM Jahnel, J Steger, B Zimmerman, R Reischl, ... BioRxiv, 2020.07. 19.210658, 2020 | 13 | 2020 |
Finding aptamers and small ribozymes in unexpected places K Matylla‐Kulinska, JL Boots, B Zimmermann, R Schroeder Wiley Interdisciplinary Reviews: RNA 3 (1), 73-91, 2012 | 13 | 2012 |
Dispersal and speciation: The cross Atlantic relationship of two parasitic cnidarians R Dnyansagar, B Zimmermann, Y Moran, D Praher, P Sundberg, ... Molecular Phylogenetics and Evolution 126, 346-355, 2018 | 12 | 2018 |
Emergence of distinct syntenic density regimes is associated with early metazoan genomic transitions NSM Robert, F Sarigol, B Zimmermann, A Meyer, CR Voolstra, O Simakov BMC genomics 23 (1), 143, 2022 | 9 | 2022 |
Sea anemone genomes reveal ancestral metazoan chromosomal macrosynteny. bioRxiv: 2020.10. 30.359448 B Zimmermann, SMC Robb, G Genikhovich, WJ Fropf, L Weilguny, S He, ... | 8 | 2020 |