MEME Suite: tools for motif discovery and searching TL Bailey, M Boden, FA Buske, M Frith, CE Grant, L Clementi, J Ren, ... Nucleic acids research 37 (suppl_2), W202-W208, 2009 | 9543 | 2009 |
Fitting a mixture model by expectation maximization to discover motifs in bipolymers TL Bailey, C Elkan Department of Computer Science and Engineering, University of California …, 1994 | 6266 | 1994 |
The transcriptional landscape of the mammalian genome P Carninci, T Kasukawa, S Katayama, J Gough, MC Frith, N Maeda, ... Science 309 (5740), 1559-1563, 2005 | 4090 | 2005 |
FIMO: scanning for occurrences of a given motif CE Grant, TL Bailey, WS Noble Bioinformatics 27 (7), 1017-1018, 2011 | 3890 | 2011 |
The MEME suite TL Bailey, J Johnson, CE Grant, WS Noble Nucleic acids research 43 (W1), W39-W49, 2015 | 3076 | 2015 |
MEME: discovering and analyzing DNA and protein sequence motifs TL Bailey, N Williams, C Misleh, WW Li Nucleic acids research 34 (suppl_2), W369-W373, 2006 | 2797 | 2006 |
Quantifying similarity between motifs S Gupta, JA Stamatoyannopoulos, TL Bailey, WS Noble Genome biology 8, 1-9, 2007 | 1973 | 2007 |
MEME-ChIP: motif analysis of large DNA datasets P Machanick, TL Bailey Bioinformatics 27 (12), 1696-1697, 2011 | 1733 | 2011 |
Assessing computational tools for the discovery of transcription factor binding sites M Tompa, N Li, TL Bailey, GM Church, B De Moor, E Eskin, AV Favorov, ... Nature biotechnology 23 (1), 137-144, 2005 | 1608 | 2005 |
Combining evidence using p-values: application to sequence homology searches. TL Bailey, M Gribskov Bioinformatics (Oxford, England) 14 (1), 48-54, 1998 | 1467 | 1998 |
DREME: motif discovery in transcription factor ChIP-seq data TL Bailey Bioinformatics 27 (12), 1653-1659, 2011 | 1175 | 2011 |
Unsupervised learning of multiple motifs in biopolymers using expectation maximization TL Bailey, C Elkan Machine learning 21, 51-80, 1995 | 981 | 1995 |
The value of prior knowledge in discovering motifs with MEME. TL Bailey, C Elkan Ismb 3, 21-29, 1995 | 925 | 1995 |
Defining the RGG/RG motif P Thandapani, TR O’Connor, TL Bailey, S Richard Molecular cell 50 (5), 613-623, 2013 | 684 | 2013 |
Motif Enrichment Analysis: a unified framework and an evaluation on ChIP data RC McLeay, TL Bailey BMC bioinformatics 11, 1-11, 2010 | 660 | 2010 |
Inferring direct DNA binding from ChIP-seq TL Bailey, P Machanick Nucleic acids research 40 (17), e128-e128, 2012 | 518 | 2012 |
Statistical confidence estimation for Hi-C data reveals regulatory chromatin contacts F Ay, TL Bailey, WS Noble Genome research 24 (6), 999-1011, 2014 | 505 | 2014 |
The transcriptional network that controls growth arrest and differentiation in a human myeloid leukemia cell line Nature genetics 41 (5), 553-562, 2009 | 420 | 2009 |
Discovering sequence motifs with arbitrary insertions and deletions MC Frith, NFW Saunders, B Kobe, TL Bailey PLoS computational biology 4 (5), e1000071, 2008 | 398 | 2008 |
STREME: accurate and versatile sequence motif discovery TL Bailey Bioinformatics 37 (18), 2834-2840, 2021 | 361 | 2021 |