PLUMED: A portable plugin for free-energy calculations with molecular dynamics M Bonomi, D Branduardi, G Bussi, C Camilloni, D Provasi, P Raiteri, ... Computer Physics Communications 180 (10), 1961-1972, 2009 | 1741 | 2009 |
Promoting transparency and reproducibility in enhanced molecular simulations M Bonomi, G Bussi, C Camilloni, GA Tribello, P Banáš, A Barducci, ... Nature methods 16 (8), 670-673, 2019 | 684 | 2019 |
A kinetic model of trp-cage folding from multiple biased molecular dynamics simulations F Marinelli, F Pietrucci, A Laio, S Piana PLoS computational biology 5 (8), e1000452, 2009 | 325 | 2009 |
Formation of nucleobases in a Miller–Urey reducing atmosphere M Ferus, F Pietrucci, AM Saitta, A Knížek, P Kubelík, O Ivanek, ... Proceedings of the National Academy of Sciences 114 (17), 4306-4311, 2017 | 176 | 2017 |
Ab initio study of the vibrational properties of crystalline TeO 2: The α, β, and γ phases M Ceriotti, F Pietrucci, M Bernasconi Physical Review B 73 (10), 104304, 2006 | 176 | 2006 |
A collective variable for the efficient exploration of protein beta-sheet structures: Application to SH3 and GB1 F Pietrucci, A Laio Journal of Chemical Theory and Computation 5, 2197, 2009 | 174 | 2009 |
Machine learning force fields and coarse-grained variables in molecular dynamics: application to materials and biological systems P Gkeka, G Stoltz, A Barati Farimani, Z Belkacemi, M Ceriotti, JD Chodera, ... Journal of Chemical Theory and Computation 16 (8), 4757-4775, 2020 | 166 | 2020 |
Substrate binding mechanism of HIV-1 protease from explicit-solvent atomistic simulations F Pietrucci, F Marinelli, P Carloni, A Laio Journal of the American Chemical Society 131, 11811, 2009 | 164 | 2009 |
Strategies for the exploration of free energy landscapes: unity in diversity and challenges ahead F Pietrucci Reviews in Physics 2, 32-45, 2017 | 158 | 2017 |
Graph theory meets ab initio molecular dynamics: Atomic structures and transformations at the nanoscale F Pietrucci, W Andreoni Physical Review Letters 107 (8), 085504, 2011 | 157 | 2011 |
Formamide reaction network in gas phase and solution via a unified theoretical approach: Toward a reconciliation of different prebiotic scenarios F Pietrucci, AM Saitta Proceedings of the National Academy of Sciences 112 (49), 15030-15035, 2015 | 138 | 2015 |
Metadynamics convergence law in a multidimensional system Y Crespo, F Marinelli, F Pietrucci, A Laio Physical Review E 81 (5), 055701, 2010 | 105 | 2010 |
METAGUI. A VMD interface for analyzing metadynamics and molecular dynamics simulations X Biarnés, F Pietrucci, F Marinelli, A Laio Computer Physics Communications 183 (1), 203-211, 2012 | 98 | 2012 |
Vacancy-vacancy interaction and oxygen diffusion in stabilized cubic ZrO 2 from first principles F Pietrucci, M Bernasconi, A Laio, M Parrinello Physical Review B 78 (9), 094301, 2008 | 97 | 2008 |
Multidimensional View of Amyloid Fibril Nucleation in Atomistic Detail F Baftizadeh, X Biarnes, F Pietrucci, F Affinito, A Laio Journal of the American Chemical Society 134 (8), 3886-3894, 2012 | 93 | 2012 |
Ab initio study of yttria-stabilized cubic zirconia surfaces G Ballabio, M Bernasconi, F Pietrucci, S Serra Physical Review B 70 (7), 075417, 2004 | 78 | 2004 |
Exploring the universe of protein structures beyond the Protein Data Bank P Cossio, A Trovato, F Pietrucci, F Seno, A Maritan, A Laio PLoS computational biology 6 (11), e1000957, 2010 | 76 | 2010 |
Capture and Release of CO2 in Monoethanolamine Aqueous Solutions: New Insights from First-Principles Reaction Dynamics C Ma, F Pietrucci, W Andreoni Journal of chemical theory and computation 11 (7), 3189-3198, 2015 | 73 | 2015 |
Pre-critical fluctuations and what they disclose about heterogeneous crystal nucleation M Fitzner, GC Sosso, F Pietrucci, S Pipolo, A Michaelides Nature communications 8 (1), 2257, 2017 | 71 | 2017 |
HAL-Muséum National d'Histoire Naturelle G Cassone, F Pietrucci, F Saija, F Guyot, J Sponer | 70* | |