Comparative analysis of algorithms for next-generation sequencing read alignment M Ruffalo, T LaFramboise, M Koyutürk Bioinformatics 27 (20), 2790-2796, 2011 | 356 | 2011 |
Pairwise alignment of protein interaction networks M Koyutürk, Y Kim, U Topkara, S Subramaniam, W Szpankowski, ... Journal of Computational Biology 13 (2), 182-199, 2006 | 349 | 2006 |
An efficient algorithm for detecting frequent subgraphs in biological networks M Koyuturk, A Grama, W Szpankowski ISMB/ECCB (Supplement of Bioinformatics), 200-207, 2004 | 281 | 2004 |
The KSEA App: a web-based tool for kinase activity inference from quantitative phosphoproteomics DD Wiredja, M Koyutürk, MR Chance Bioinformatics 33 (21), 3489-3491, 2017 | 206 | 2017 |
DADA: degree-aware algorithms for network-based disease gene prioritization S Erten, G Bebek, RM Ewing, M Koyutürk BioData mining 4 (1), 1-20, 2011 | 202 | 2011 |
An integrative-omics approach to identify functional sub-networks in human colorectal cancer RK Nibbe, M Koyutürk, MR Chance PLoS computational biology 6 (1), e1000639, 2010 | 183 | 2010 |
Redundant-reader elimination in RFID systems B Carbunar, MK Ramanathan, M Koyuturk, CM Hoffmann, AY Grama | 175 | 2005 |
Drug response prediction as a link prediction problem Z Stanfield, M Coşkun, M Koyutürk Scientific reports 7 (1), 40321, 2017 | 127 | 2017 |
Vavien: an algorithm for prioritizing candidate disease genes based on topological similarity of proteins in interaction networks S Erten, G Bebek, M Koyutürk Journal of Computational Biology 18 (11), 1561-1574, 2011 | 121 | 2011 |
Detecting conserved interaction patterns in biological networks M Koyutürk, Y Kim, S Subramaniam, W Szpankowski, A Grama Journal of Computational Biology 13 (7), 1299-1322, 2006 | 114 | 2006 |
Protein–protein interaction networks and subnetworks in the biology of disease RK Nibbe, SA Chowdhury, M Koyutürk, R Ewing, MR Chance Wiley Interdisciplinary Reviews: Systems Biology and Medicine 3 (3), 357-367, 2011 | 103 | 2011 |
Compression, clustering, and pattern discovery in very high-dimensional discrete-attribute data sets M Koyuturk, A Grama, N Ramakrishnan IEEE Transactions on Knowledge and Data Engineering 17 (4), 447-461, 2005 | 102 | 2005 |
Subnetwork state functions define dysregulated subnetworks in cancer SA Chowdhury, RK Nibbe, MR Chance, M Koyutürk Journal of Computational Biology 18 (3), 263-281, 2011 | 96 | 2011 |
Pairwise local alignment of protein interaction networks guided by models of evolution M Koyutürk, A Grama, W Szpankowski Annual International Conference on Research in Computational Molecular …, 2005 | 90 | 2005 |
Mining electronic health records data: Domestic violence and adverse health effects G Karakurt, V Patel, K Whiting, M Koyutürk Journal of family violence 32, 79-87, 2017 | 89 | 2017 |
Assessing significance of connectivity and conservation in protein interaction networks M Koyutürk, W Szpankowski, A Grama Journal of Computational Biology 14 (6), 747-764, 2007 | 87 | 2007 |
Network signatures of survival in glioblastoma multiforme VN Patel, G Gokulrangan, SA Chowdhury, Y Chen, AE Sloan, M Koyutürk, ... PLoS computational biology 9 (9), e1003237, 2013 | 79 | 2013 |
Network-based integration of disparate omic data to identify" silent players" in cancer M Ruffalo, M Koyutürk, R Sharan PLoS computational biology 11 (12), e1004595, 2015 | 72 | 2015 |
Efficient tag detection in RFID systems B Carbunar, MK Ramanathan, M Koyutürk, S Jagannathan, A Grama Journal of Parallel and Distributed Computing 69 (2), 180-196, 2009 | 69 | 2009 |
Network biology methods integrating biological data for translational science G Bebek, M Koyutürk, ND Price, MR Chance Briefings in bioinformatics 13 (4), 446-459, 2012 | 67 | 2012 |