Challenges in microbial ecology: building predictive understanding of community function and dynamics S Widder, RJ Allen, T Pfeiffer, TP Curtis, C Wiuf, WT Sloan, OX Cordero, ... The ISME journal 10 (11), 2557-2568, 2016 | 676 | 2016 |
Global diversity and biogeography of bacterial communities in wastewater treatment plants L Wu, D Ning, B Zhang, Y Li, P Zhang, X Shan, Q Zhang, M Brown, Z Li, ... Nature microbiology 4 (7), 1183-1195, 2019 | 566 | 2019 |
Wastewater treatment plant resistomes are shaped by bacterial composition, genetic exchange, and upregulated expression in the effluent microbiomes F Ju, K Beck, X Yin, A Maccagnan, CS McArdell, HP Singer, DR Johnson, ... The ISME journal 13 (2), 346-360, 2019 | 333 | 2019 |
Engineering microbial consortia for controllable outputs SR Lindemann, HC Bernstein, HS Song, JK Fredrickson, MW Fields, ... The ISME journal 10 (9), 2077-2084, 2016 | 327 | 2016 |
Micropollutant biotransformation kinetics associate with WWTP process parameters and microbial community characteristics DE Helbling, DR Johnson, M Honti, K Fenner Environmental science & technology 46 (19), 10579-10588, 2012 | 224 | 2012 |
Use of flow cytometric methods for single-cell analysis in environmental microbiology K Czechowska, DR Johnson, JR van der Meer Current opinion in microbiology 11 (3), 205-212, 2008 | 202 | 2008 |
An Internal Reference Technique for Accurately Quantifying Specific mRNAs by Real-Time PCR with Application to the tceA Reductive Dehalogenase Gene DR Johnson, PKH Lee, VF Holmes, L Alvarez-Cohen Applied and environmental microbiology 71 (7), 3866-3871, 2005 | 186 | 2005 |
Sustainable syntrophic growth of Dehalococcoides ethenogenes strain 195 with Desulfovibrio vulgaris Hildenborough and Methanobacterium congolense: global transcriptomic and … Y Men, H Feil, NC VerBerkmoes, MB Shah, DR Johnson, PKH Lee, ... The ISME journal 6 (2), 410-421, 2012 | 157 | 2012 |
Relative contribution of ammonia oxidizing bacteria and other members of nitrifying activated sludge communities to micropollutant biotransformation Y Men, S Achermann, DE Helbling, DR Johnson, K Fenner Water research 109, 217-226, 2017 | 153 | 2017 |
Metabolic specialization and the assembly of microbial communities DR Johnson, F Goldschmidt, EE Lilja, M Ackermann The ISME journal 6 (11), 1985-1991, 2012 | 151 | 2012 |
Reductive Dehalogenase Gene Expression as a Biomarker for Physiological Activity of Dehalococcoides spp PKH Lee, DR Johnson, VF Holmes, J He, L Alvarez-Cohen Applied and Environmental Microbiology 72 (9), 6161-6168, 2006 | 148 | 2006 |
A combination of extreme environmental conditions favor the prevalence of endospore-forming firmicutes S Filippidou, T Wunderlin, T Junier, N Jeanneret, C Dorador, V Molina, ... Frontiers in microbiology 7, 1707, 2016 | 139 | 2016 |
Association of biodiversity with the rates of micropollutant biotransformations among full-scale wastewater treatment plant communities DR Johnson, DE Helbling, TK Lee, J Park, K Fenner, HPE Kohler, ... Applied and environmental microbiology 81 (2), 666-675, 2015 | 137 | 2015 |
A conceptual framework for invasion in microbial communities M Kinnunen, A Dechesne, C Proctor, F Hammes, D Johnson, ... The ISME journal 10 (12), 2773-2779, 2016 | 112 | 2016 |
Segregating metabolic processes into different microbial cells accelerates the consumption of inhibitory substrates EE Lilja, DR Johnson The ISME journal 10 (7), 1568-1578, 2016 | 109 | 2016 |
Temporal Transcriptomic Microarray Analysis of “Dehalococcoides ethenogenes” Strain 195 during the Transition into Stationary Phase DR Johnson, EL Brodie, AE Hubbard, GL Andersen, SH Zinder, ... Applied and Environmental Microbiology 74 (9), 2864-2872, 2008 | 103 | 2008 |
Synthetic microbial ecology and the dynamic interplay between microbial genotypes J Dolinšek, F Goldschmidt, DR Johnson FEMS microbiology reviews 40 (6), 961-979, 2016 | 96 | 2016 |
Transcriptional Expression of the tceA Gene in a Dehalococcoides-Containing Microbial Enrichment DR Johnson, PKH Lee, VF Holmes, AC Fortin, L Alvarez-Cohen Applied and Environmental Microbiology 71 (11), 7145-7151, 2005 | 95 | 2005 |
The functional and taxonomic richness of wastewater treatment plant microbial communities are associated with each other and with ambient nitrogen and carbon availability DR Johnson, TK Lee, J Park, K Fenner, DE Helbling Environmental microbiology 17 (12), 4851-4860, 2015 | 94 | 2015 |
The activity level of a microbial community function can be predicted from its metatranscriptome DE Helbling, M Ackermann, K Fenner, HPE Kohler, DR Johnson The ISME journal 6 (4), 902-904, 2012 | 92 | 2012 |