SpatialData: an open and universal data framework for spatial omics L Marconato, G Palla, KA Yamauchi, I Virshup, E Heidari, T Treis, ... Nature Methods, 1-5, 2024 | 26 | 2024 |
Single nuclei RNAseq stratifies multiple sclerosis patients into distinct white matter glial responses W Macnair, D Calini, E Agirre, J Bryois, S Jäkel, P Kukanja, N Stokar, V Ott, ... BioRxiv, 2022.04. 06.487263, 2022 | 16 | 2022 |
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability A Sonrel, A Luetge, C Soneson, I Mallona, PL Germain, S Knyazev, J Gilis, ... Genome Biology 24 (1), 119, 2023 | 7 | 2023 |
An end-to-end workflow for high-throughput discovery of clinically relevant insights from large biomedical datasets E Heidari, MA Sadeghi, VB Meresht, N Ahmadi, M Sadr, M Mirzaei, ... | 3* | 2020 |
Supervised spatial inference of dissociated single-cell data with SageNet E Heidari, T Lohoff, RCV Tyser, JC Marioni, MD Robinson, S Ghazanfar bioRxiv, 2022.04. 14.488419, 2022 | 2 | 2022 |
Pin1 Regulatory miRNAs as Novel Candidates for Alzheimer’s Disease Treatment E Heidari, ES Siavashani, M Rasooli, Z Amiri, A Sharifi-Zarchi, ... bioRxiv, 472985, 2018 | 2 | 2018 |
Integrated combinatorial functional genomics and spatial transcriptomics of tumors decodes genotype to phenotype relationships M Breinig*, A Lomakin*, E Heidari*, M Ritter, G Rukhovich, L Boese, ... bioRxiv, 2024.05. 14.593940, 2024 | | 2024 |
Meta-analysis of (single-cell method) benchmarks reveals the need for extensibility and interoperability ES Paul, HL Crowell, I Fanaswala, A Al-Ajami, E Heidari, S Schmeing, ... | | |
SpatialData: an open and universal data framework for spatial omics I Virshup, E Heidari, T Treis, WM Vierdag, M Toth, S Stockhaus, ... | | |