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Emily K Cope
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Reproducible, interactive, scalable and extensible microbiome data science using QIIME 2
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, CC Abnet, GA Al-Ghalith, ...
Nature biotechnology 37 (8), 852-857, 2019
149962019
QIIME 2: Reproducible, interactive, scalable, and extensible microbiome data science
E Bolyen, JR Rideout, MR Dillon, NA Bokulich, C Abnet, GA Al-Ghalith, ...
PeerJ Preprints, 2018
9772018
In vitro antimicrobial studies of silver carbene complexes: activity of free and nanoparticle carbene formulations against clinical isolates of pathogenic bacteria
JG Leid, AJ Ditto, A Knapp, PN Shah, BD Wright, R Blust, L Christensen, ...
Journal of antimicrobial chemotherapy 67 (1), 138-148, 2012
1952012
Compositionally and functionally distinct sinus microbiota in chronic rhinosinusitis patients have immunological and clinically divergent consequences
EK Cope, AN Goldberg, SD Pletcher, SV Lynch
Microbiome 5, 1-16, 2017
1792017
Mapping and comparing bacterial microbiota in the sinonasal cavity of healthy, allergic rhinitis, and chronic rhinosinusitis subjects
D Lal, P Keim, J Delisle, B Barker, MA Rank, N Chia, JM Schupp, ...
International forum of allergy & rhinology 7 (6), 561-569, 2017
1152017
Tobacco smoke mediated induction of sinonasal microbial biofilms
N Goldstein-Daruech, EK Cope, KQ Zhao, K Vukovic, JM Kofonow, ...
PloS one 6 (1), e15700, 2011
1152011
Impact of different exercise modalities on the human gut microbiome
D Bycura, AC Santos, A Shiffer, S Kyman, K Winfree, J Sutliffe, T Pearson, ...
Sports 9 (2), 14, 2021
782021
The international sinonasal microbiome study: a multicentre, multinational characterization of sinonasal bacterial ecology
S Paramasivan, A Bassiouni, A Shiffer, MR Dillon, EK Cope, C Cooksley, ...
Allergy 75 (8), 2037-2049, 2020
682020
Novel microbiome-based therapeutics for chronic rhinosinusitis
EK Cope, SV Lynch
Current allergy and asthma reports 15, 1-10, 2015
662015
Synthesis and in vitro efficacy studies of silver carbene complexes on biosafety level 3 bacteria
MJ Panzner, A Deeraksa, A Smith, BD Wright, KM Hindi, ...
European journal of inorganic chemistry 2009 (13), 1739-1745, 2009
642009
Regulation of virulence gene expression resulting from Streptococcus pneumoniae and nontypeable Haemophilus influenzae interactions in chronic disease
EK Cope, N Goldstein-Daruech, JM Kofonow, L Christensen, ...
PLoS One 6 (12), e28523, 2011
612011
Fungal microbiota in chronic airway inflammatory disease and emerging relationships with the host immune response
I Zhang, SD Pletcher, AN Goldberg, BM Barker, EK Cope
Frontiers in Microbiology 8, 2477, 2017
582017
Flagellum-Mediated Biofilm Defense Mechanisms of Pseudomonas aeruginosa against Host-Derived Lactoferrin
JG Leid, M Kerr, C Selgado, C Johnson, G Moreno, A Smith, ME Shirtliff, ...
Infection and immunity 77 (10), 4559-4566, 2009
392009
Do the bugs in your gut eat your memories? Relationship between gut microbiota and Alzheimer’s disease
EM Borsom, K Lee, EK Cope
Brain Sciences 10 (11), 814, 2020
372020
Probiotic strategies for treatment of respiratory diseases
NA Nagalingam, EK Cope, SV Lynch
Trends in microbiology 21 (9), 485-492, 2013
342013
Unraveling the role of the microbiome in chronic rhinosinusitis
AJ Psaltis, BW Mackenzie, EK Cope, VR Ramakrishnan
Journal of Allergy and Clinical Immunology 149 (5), 1513-1521, 2022
332022
Loss of microbial niche specificity between the upper and lower airways in patients with cystic fibrosis
SD Pletcher, AN Goldberg, EK Cope
The Laryngoscope 129 (3), 544-550, 2019
322019
Heterogeneity of microbiota dysbiosis in chronic rhinosinusitis: potential clinical implications and microbial community mechanisms contributing to sinonasal inflammation
K Lee, SD Pletcher, SV Lynch, AN Goldberg, EK Cope
Frontiers in cellular and infection microbiology 8, 168, 2018
312018
IL-13–programmed airway tuft cells produce PGE2, which promotes CFTR-dependent mucociliary function
ME Kotas, CM Moore, JG Gurrola, SD Pletcher, AN Goldberg, R Alvarez, ...
JCI insight 7 (13), 2022
292022
The microbiome in obstructive sleep apnea
Y Cai, HM Juszczak, EK Cope, AN Goldberg
Sleep 44 (8), zsab061, 2021
282021
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