HemI: a toolkit for illustrating heatmaps W Deng, Y Wang, Z Liu, H Cheng, Y Xue PloS one 9 (11), e111988, 2014 | 969 | 2014 |
GPS 5.0: an update on the prediction of kinase-specific phosphorylation sites in proteins C Wang, H Xu, S Lin, W Deng, J Zhou, Y Zhang, Y Shi, D Peng, Y Xue Genomics, Proteomics and Bioinformatics 18 (1), 72-80, 2020 | 249 | 2020 |
PLMD: an updated data resource of protein lysine modifications H Xu, J Zhou, S Lin, W Deng, Y Zhang, Y Xue Journal of Genetics and Genomics 44 (5), 243-250, 2017 | 198 | 2017 |
PTMD: a database of human disease-associated post-translational modifications H Xu, Y Wang, S Lin, W Deng, D Peng, Q Cui, Y Xue Genomics, Proteomics and Bioinformatics 16 (4), 244-251, 2018 | 181 | 2018 |
GPS-PAIL: prediction of lysine acetyltransferase-specific modification sites from protein sequences W Deng, C Wang, Y Zhang, Y Xu, S Zhang, Z Liu, Y Xue Scientific reports 6 (1), 39787, 2016 | 109 | 2016 |
WERAM: a database of writers, erasers and readers of histone acetylation and methylation in eukaryotes Y Xu, S Zhang, S Lin, Y Guo, W Deng, Y Zhang, Y Xue Nucleic acids research, gkw1011, 2016 | 98 | 2016 |
Database resources of the BIG data center in 2019 BIGDC Members Nucleic acids research 47 (Database issue), D8, 2019 | 95 | 2019 |
Computational prediction of methylation types of covalently modified lysine and arginine residues in proteins W Deng, Y Wang, L Ma, Y Zhang, S Ullah, Y Xue Briefings in Bioinformatics 18 (4), 647-658, 2017 | 86 | 2017 |
dbPAF: an integrative database of protein phosphorylation in animals and fungi S Ullah, S Lin, Y Xu, W Deng, L Ma, Y Zhang, Z Liu, Y Xue Scientific reports 6 (1), 23534, 2016 | 79 | 2016 |
iUUCD 2.0: an update with rich annotations for ubiquitin and ubiquitin-like conjugations J Zhou, Y Xu, S Lin, Y Guo, W Deng, Y Zhang, A Guo, Y Xue Nucleic acids research 46 (D1), D447-D453, 2018 | 69 | 2018 |
Mechanism of cargo recognition by retromer-linked SNX-BAR proteins X Yong, L Zhao, W Deng, H Sun, X Zhou, L Mao, W Hu, X Shen, Q Sun, ... PLoS biology 18 (3), e3000631, 2020 | 67 | 2020 |
CGDB: a database of circadian genes in eukaryotes S Li, K Shui, Y Zhang, Y Lv, W Deng, S Ullah, L Zhang, Y Xue Nucleic acids research, gkw1028, 2016 | 64 | 2016 |
Phosphoproteome-based kinase activity profiling reveals the critical role of MAP2K2 and PLK1 in neuronal autophagy LL Chen, YB Wang, JX Song, WK Deng, JH Lu, LL Ma, CB Yang, M Li, ... Autophagy 13 (11), 1969-1980, 2017 | 59 | 2017 |
dbPPT: a comprehensive database of protein phosphorylation in plants H Cheng, W Deng, Y Wang, J Ren, Z Liu, Y Xue Database 2014, bau121, 2014 | 55 | 2014 |
Information commons for rice (IC4R) IC4R Project Consortium Nucleic acids research 44 (D1), D1172-D1180, 2016 | 45 | 2016 |
An integrative multi-omics approach uncovers the regulatory role of CDK7 and CDK4 in autophagy activation induced by silica nanoparticles C Ruan, C Wang, X Gong, Y Zhang, W Deng, J Zhou, D Huang, Z Wang, ... Autophagy 17 (6), 1426-1447, 2021 | 42 | 2021 |
THANATOS: an integrative data resource of proteins and post-translational modifications in the regulation of autophagy W Deng, L Ma, Y Zhang, J Zhou, Y Wang, Z Liu, Y Xue Autophagy 14 (2), 296-310, 2018 | 39 | 2018 |
Phosphorylation of SNX27 by MAPK11/14 links cellular stress–signaling pathways with endocytic recycling L Mao, C Liao, J Qin, Y Gong, Y Zhou, S Li, Z Liu, H Deng, W Deng, Q Sun, ... Journal of Cell Biology 220 (4), 2021 | 31 | 2021 |
HybridSucc: a hybrid-learning architecture for general and species-specific succinylation site prediction W Ning, H Xu, P Jiang, H Cheng, W Deng, Y Guo, Y Xue Genomics, Proteomics and Bioinformatics 18 (2), 194-207, 2020 | 31 | 2020 |
Towards a better understanding of the novel avian-origin H7N9 influenza A virus in China Y Wang, Z Dai, H Cheng, Z Liu, Z Pan, W Deng, T Gao, X Li, Y Yao, J Ren, ... Scientific Reports 3 (1), 2318, 2013 | 30 | 2013 |