Using DECIPHER v2.0 to Analyze Big Biological Sequence Data in R ES Wright The R Journal 8 (1), 352-359, 2016 | 808 | 2016 |
DECIPHER, a search-based approach to chimera identification for 16S rRNA sequences ES Wright, LS Yilmaz, DR Noguera Applied and environmental microbiology 78 (3), 717-725, 2012 | 751 | 2012 |
IDTAXA: a novel approach for accurate taxonomic classification of microbiome sequences A Murali, A Bhargava, ES Wright Microbiome 6, 1-14, 2018 | 436 | 2018 |
DECIPHER: harnessing local sequence context to improve protein multiple sequence alignment ES Wright BMC bioinformatics 16, 1-14, 2015 | 324 | 2015 |
Quality filtering of Illumina index reads mitigates sample cross-talk ES Wright, KH Vetsigian BMC genomics 17, 1-7, 2016 | 120 | 2016 |
Inhibitory interactions promote frequent bistability among competing bacteria ES Wright, KH Vetsigian Nature communications 7 (1), 11274, 2016 | 117 | 2016 |
Exploiting extension bias in polymerase chain reaction to improve primer specificity in ensembles of nearly identical DNA templates ES Wright, LS Yilmaz, S Ram, JM Gasser, GW Harrington, DR Noguera Environmental microbiology 16 (5), 1354-1365, 2014 | 86 | 2014 |
Automated Design of Probes for rRNA-Targeted Fluorescence In Situ Hybridization Reveals the Advantages of Using Dual Probes for Accurate Identification ES Wright, LS Yilmaz, AM Corcoran, HE Ökten, DR Noguera Applied and environmental microbiology 80 (16), 5124-5133, 2014 | 54 | 2014 |
RNAconTest: comparing tools for noncoding RNA multiple sequence alignment based on structural consistency ES Wright Rna 26 (5), 531-540, 2020 | 50 | 2020 |
Identification of antibiotic pairs that evade concurrent resistance via a retrospective analysis of antimicrobial susceptibility test results AM Beckley, ES Wright The Lancet Microbe 2 (10), e545-e554, 2021 | 33 | 2021 |
Stochastic exits from dormancy give rise to heavy‐tailed distributions of descendants in bacterial populations ES Wright, KH Vetsigian Molecular ecology 28 (17), 3915-3928, 2019 | 28 | 2019 |
Mathematical tools to optimize the design of oligonucleotide probes and primers DR Noguera, ES Wright, P Camejo, LS Yilmaz Applied microbiology and biotechnology 98, 9595-9608, 2014 | 28 | 2014 |
Modeling formamide denaturation of probe-target hybrids for improved microarray probe design in microbial diagnostics LS Yilmaz, A Loy, ES Wright, M Wagner, DR Noguera Public Library of Science 7 (8), e43862, 2012 | 22 | 2012 |
Exclusivity offers a sound yet practical species criterion for bacteria despite abundant gene flow ES Wright, DA Baum BMC genomics 19, 1-12, 2018 | 18 | 2018 |
Parallel evolution between genomic segments of seasonal human influenza viruses reveals RNA-RNA relationships JE Jones, V Le Sage, GH Padovani, M Calderon, ES Wright, S Lakdawala eLife, 2021 | 15 | 2021 |
Multi-stable bacterial communities exhibit extreme sensitivity to initial conditions ES Wright, R Gupta, KH Vetsigian FEMS Microbiology Ecology 97 (6), fiab073, 2021 | 14 | 2021 |
DesignSignatures: a tool for designing primers that yields amplicons with distinct signatures ES Wright, KH Vetsigian Bioinformatics 32 (10), 1565-1567, 2016 | 13 | 2016 |
AssessORF: combining evolutionary conservation and proteomics to assess prokaryotic gene predictions DR Korandla, JM Wozniak, A Campeau, DJ Gonzalez, ES Wright Bioinformatics 36 (4), 1022-1029, 2020 | 11 | 2020 |
Ten simple rules for hitting a home run with your elevator pitch WR Morgan, ES Wright PLoS Computational Biology 17 (3), e1008756, 2021 | 10 | 2021 |
Multi-factorial examination of amplicon sequencing workflows from sample preparation to bioinformatic analysis TJ De Wolfe, ES Wright BMC microbiology 23 (1), 107, 2023 | 6 | 2023 |