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OpenMS: a flexible open-source software platform for mass spectrometry data analysis HL Röst, T Sachsenberg, S Aiche, C Bielow, H Weisser, F Aicheler, ... Nature methods 13 (9), 741-748, 2016 | 640 | 2016 |
Normalization strategies for cDNA microarrays J Schuchhardt, D Beule, A Malik, E Wolski, H Eickhoff, H Lehrach, ... Nucleic Acids Research 28 (10), e47-e47, 2000 | 500 | 2000 |
Rapid mass spectrometric conversion of tissue biopsy samples into permanent quantitative digital proteome maps T Guo, P Kouvonen, CC Koh, LC Gillet, WE Wolski, HL Röst, ... Nature medicine 21 (4), 407-413, 2015 | 378 | 2015 |
Building high-quality assay libraries for targeted analysis of SWATH MS data OT Schubert, LC Gillet, BC Collins, P Navarro, G Rosenberger, WE Wolski, ... Nature protocols 10 (3), 426-441, 2015 | 350 | 2015 |
Systems proteomics of liver mitochondria function EG Williams, Y Wu, P Jha, S Dubuis, P Blattmann, CA Argmann, ... Science 352 (6291), aad0189, 2016 | 303 | 2016 |
Normalization in MALDI-TOF imaging datasets of proteins: practical considerations SO Deininger, DS Cornett, R Paape, M Becker, C Pineau, S Rauser, ... Analytical and bioanalytical chemistry 401, 167-181, 2011 | 265 | 2011 |
Multilayered genetic and omics dissection of mitochondrial activity in a mouse reference population Y Wu, EG Williams, S Dubuis, A Mottis, V Jovaisaite, SM Houten, ... Cell 158 (6), 1415-1430, 2014 | 247 | 2014 |
The SysteMHC atlas project W Shao, PGA Pedrioli, W Wolski, C Scurtescu, E Schmid, JA Vizcaíno, ... Nucleic acids research 46 (D1), D1237-D1247, 2018 | 143 | 2018 |
Analysis of differential gene expression in stretched podocytes: osteopontin enhances adaptation of podocytes to mechanical stress N Endlich, M Sunohara, W Nietfeld, EW Wolski, D Schiwek, B Kränzlin, ... The FASEB Journal 16 (13), 1-24, 2002 | 102 | 2002 |
Targeted proteomics guided by label-free quantitative proteome analysis in saliva reveal transition signatures from health to periodontal disease N Bostanci, N Selevsek, W Wolski, J Grossmann, K Bao, A Wahlander, ... Molecular & Cellular Proteomics 17 (7), 1392-1409, 2018 | 91 | 2018 |
Tissue gene expression analysis using arrayed normalized cDNA libraries H Eickhoff, J Schuchhardt, I Ivanov, S Meier-Ewert, J O'Brien, A Malik, ... Genome research 10 (8), 1230-1240, 2000 | 70 | 2000 |
Epigenetics and proteomics join transcriptomics in the quest for tuberculosis biomarkers MM Esterhuyse, J Weiner 3rd, E Caron, AG Loxton, M Iannaccone, ... MBio 6 (5), 10.1128/mbio. 01187-15, 2015 | 68 | 2015 |
APOE2, E3, and E4 differentially modulate cellular homeostasis, cholesterol metabolism, and inflammatory response in isogenic iPSC-derived astrocytes SM de Leeuw, AWT Kirschner, K Lindner, R Rust, V Budny, WE Wolski, ... Stem cell reports 17 (1), 110-126, 2022 | 58 | 2022 |
Quantifying and localizing the mitochondrial proteome across five tissues in a mouse population EG Williams, Y Wu, W Wolski, JY Kim, J Lan, M Hasan, C Halter, P Jha, ... Molecular & Cellular Proteomics 17 (9), 1766-1777, 2018 | 47 | 2018 |
Targeted proteomics coming of age–SRM, PRM and DIA performance evaluated from a core facility perspective T Kockmann, C Trachsel, C Panse, A Wahlander, N Selevsek, ... Proteomics 16 (15-16), 2183-2192, 2016 | 47 | 2016 |
iPortal: the swiss grid proteomics portal: Requirements and new features based on experience and usability considerations P Kunszt, L Blum, B Hullár, E Schmid, A Srebniak, W Wolski, B Rinn, ... Concurrency and Computation: Practice and Experience 27 (2), 433-445, 2015 | 46 | 2015 |
Brain Citrullination Patterns and T Cell Reactivity of Cerebrospinal Fluid-Derived CD4+ T Cells in Multiple Sclerosis W Faigle, C Cruciani, W Wolski, B Roschitzki, M Puthenparampil, ... Frontiers in immunology 10, 540, 2019 | 41 | 2019 |
Analytical model of peptide mass cluster centres with applications WE Wolski, M Farrow, AK Emde, H Lehrach, M Lalowski, K Reinert Proteome science 4, 1-19, 2006 | 37 | 2006 |
rawDiag: an R package supporting rational LC–MS method optimization for bottom-up proteomics C Trachsel, C Panse, T Kockmann, WE Wolski, J Grossmann, ... Journal of proteome research 17 (8), 2908-2914, 2018 | 36 | 2018 |