Predictive design of mRNA translation initiation region to control prokaryotic translation efficiency SW Seo, JS Yang, I Kim, J Yang, BE Min, S Kim, GY Jung Metabolic engineering 15, 67-74, 2013 | 301 | 2013 |
Network-based machine learning approach to predict immunotherapy response in cancer patients JH Kong, D Ha, J Lee, I Kim, M Park, SH Im, K Shin, S Kim Nature communications 13 (1), 3703, 2022 | 86 | 2022 |
Rewiring of PDZ domain-ligand interaction network contributed to eukaryotic evolution J Kim, I Kim, JS Yang, YE Shin, J Hwang, S Park, YS Choi, S Kim PLoS genetics 8 (2), e1002510, 2012 | 74 | 2012 |
Network rewiring is an important mechanism of gene essentiality change J Kim, I Kim, SK Han, JU Bowie, S Kim Scientific reports 2 (1), 900, 2012 | 55 | 2012 |
Linear motif-mediated interactions have contributed to the evolution of modularity in complex protein interaction networks I Kim, H Lee, SK Han, S Kim PLoS Computational Biology 10 (10), e1003881, 2014 | 23 | 2014 |
Divergence of noncoding regulatory elements explains gene–phenotype differences between human and mouse orthologous genes SK Han, D Kim, H Lee, I Kim, S Kim Molecular Biology and Evolution 35 (7), 1653-1667, 2018 | 20 | 2018 |
Evolutionary coupling analysis identifies the impact of disease-associated variants at less-conserved sites D Kim, SK Han, K Lee, I Kim, JH Kong, S Kim Nucleic Acids Research 47 (16), e94-e94, 2019 | 14 | 2019 |
Metazoans evolved by taking domains from soluble proteins to expand intercellular communication network HJ Nam, I Kim, JU Bowie, S Kim Scientific reports 5 (1), 9576, 2015 | 14 | 2015 |
Enzyme activity engineering based on sequence co-evolution analysis D Kim, MH Noh, M Park, I Kim, H Ahn, D Ye, GY Jung, S Kim Metabolic Engineering 74, 49-60, 2022 | 10 | 2022 |
Network modules of the cross-species genotype-phenotype map reflect the clinical severity of human diseases SK Han, I Kim, J Hwang, S Kim PLoS One 10 (8), e0136300, 2015 | 10 | 2015 |
Evolutionary rewiring of regulatory networks contributes to phenotypic differences between human and mouse orthologous genes D Ha, D Kim, I Kim, Y Oh, JH Kong, SK Han, S Kim Nucleic Acids Research 50 (4), 1849-1863, 2022 | 9 | 2022 |
Link clustering explains non-central and contextually essential genes in protein interaction networks I Kim, H Lee, K Lee, SK Han, D Kim, S Kim Scientific Reports 9 (1), 11672, 2019 | 4 | 2019 |
A dietary commensal microbe enhances antitumor immunity by activating tumor macrophages to sequester iron G Sharma, A Sharma, I Kim, DG Cha, S Kim, ES Park, JG Noh, J Lee, ... Nature Immunology, 1-12, 2024 | 3 | 2024 |
Probiotic Consortium Confers Synergistic Anti-Inflammatory Effects in Inflammatory Disorders C Lee, SW Kim, R Verma, J Noh, JC Park, S Park, H Lee, HE Park, CJ Kim, ... Nutrients 16 (6), 790, 2024 | 3 | 2024 |
Domain-mediated interactions for protein subfamily identification H Lee, I Kim, SK Han, D Kim, J Kong, S Kim Scientific Reports 10 (1), 264, 2020 | 3 | 2020 |
Cell-cell communication network-based interpretable machine learning predicts cancer patient response to immune checkpoint inhibitors J Lee, D Kim, JH Kong, D Ha, I Kim, M Park, K Lee, SH Im, S Kim Science Advances 10 (5), eadj0785, 2024 | 2 | 2024 |
Drug approval prediction based on the discrepancy in gene perturbation effects between cells and humans M Park, D Kim, I Kim, SH Im, S Kim EBioMedicine 94, 2023 | 1 | 2023 |
Enzyme Activity Engineering Based on Sequence Evolution Analysis KIM Donghyo, MH NOH, P Minhyuk, KIM Inhae, AHN Hyunsoo, D YE, ... 한국생물공학회 학술대회, 375-375, 2023 | | 2023 |
Information about immune cell proportions and tumor stage improves the prediction of recurrence in patients with colorectal cancer JH Kong, J Kim, D Kim, K Lee, J Lee, SK Han, I Kim, S Lim, M Park, S Shin, ... Patterns 4 (6), 2023 | | 2023 |
An evolution-based machine learning to identify cancer type-specific driver mutations D Kim, D Ha, K Lee, H Lee, I Kim, S Kim Briefings in Bioinformatics 24 (1), bbac593, 2023 | | 2023 |