A common open representation of mass spectrometry data and its application to proteomics research PGA Pedrioli, JK Eng, R Hubley, M Vogelzang, EW Deutsch, B Raught, ... Nature biotechnology 22 (11), 1459-1466, 2004 | 968 | 2004 |
Overview of the HUPO Plasma Proteome Project: results from the pilot phase with 35 collaborating laboratories and multiple analytical groups, generating a core dataset of 3020 … GS Omenn, DJ States, M Adamski, TW Blackwell, R Menon, H Hermjakob, ... Proteomics 5 (13), 3226-3245, 2005 | 936 | 2005 |
An evaluation, comparison, and accurate benchmarking of several publicly available MS/MS search algorithms: sensitivity and specificity analysis EA Kapp, F Schütz, LM Connolly, JA Chakel, JE Meza, CA Miller, D Fenyo, ... Proteomics 5 (13), 3475-3490, 2005 | 466 | 2005 |
A HUPO test sample study reveals common problems in mass spectrometry–based proteomics AW Bell, EW Deutsch, CE Au, RE Kearney, R Beavis, S Sechi, T Nilsson, ... Nature methods 6 (6), 423-430, 2009 | 404 | 2009 |
An aspartyl protease directs malaria effector proteins to the host cell JA Boddey, AN Hodder, S Günther, PR Gilson, H Patsiouras, EA Kapp, ... Nature 463 (7281), 627-631, 2010 | 385 | 2010 |
Mining a tandem mass spectrometry database to determine the trends and global factors influencing peptide fragmentation EA Kapp, F Schütz, GE Reid, JS Eddes, RL Moritz, RAJ O'Hair, TP Speed, ... Analytical Chemistry 75 (22), 6251-6264, 2003 | 333 | 2003 |
Oncogenic H-ras reprograms Madin-Darby canine kidney (MDCK) cell-derived exosomal proteins following epithelial-mesenchymal transition BJ Tauro, RA Mathias, DW Greening, SK Gopal, H Ji, EA Kapp, ... Molecular & cellular proteomics 12 (8), 2148-2159, 2013 | 207 | 2013 |
A proteome strategy for fractionating proteins and peptides using continuous free-flow electrophoresis coupled off-line to reversed-phase high-performance liquid chromatography RL Moritz, H Ji, F Schütz, LM Connolly, EA Kapp, TP Speed, RJ Simpson Analytical chemistry 76 (16), 4811-4824, 2004 | 141 | 2004 |
Overview of tandem mass spectrometry (MS/MS) database search algorithms E Kapp, F Schütz Current Protocols in Protein Science 49 (1), 25.2. 1-25.2. 19, 2007 | 109 | 2007 |
Quantitative in vivo Analyses Reveal Calcium-dependent Phosphorylation Sites and Identifies a Novel Component of the Toxoplasma Invasion Motor Complex T Nebl, JH Prieto, E Kapp, BJ Smith, MJ Williams, JR Yates 3rd, ... PLoS pathogens 7 (9), e1002222, 2011 | 101 | 2011 |
Statistical and mechanistic approaches to understanding the gas-phase fragmentation behavior of methionine sulfoxide containing peptides GE Reid, KD Roberts, EA Kapp, RJ Simpson Journal of proteome research 3 (4), 751-759, 2004 | 96 | 2004 |
Difference gel electrophoresis analysis of Ras‐transformed fibroblast cell‐derived exosomes H Ji, N Erfani, BJ Tauro, EA Kapp, HJ Zhu, RL Moritz, JWE Lim, ... Electrophoresis 29 (12), 2660-2671, 2008 | 91 | 2008 |
Secretome-based proteomic profiling of Ras-transformed MDCK cells reveals extracellular modulators of epithelial-mesenchymal transition RA Mathias, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, RJ Simpson Journal of proteome research 8 (6), 2827-2837, 2009 | 83 | 2009 |
Characterization and identification of dityrosine cross-linked peptides using tandem mass spectrometry S Mukherjee, EA Kapp, A Lothian, AM Roberts, YV Vasil’ev, BA Boughton, ... Analytical Chemistry 89 (11), 6136-6145, 2017 | 77 | 2017 |
Application of 2‐D free‐flow electrophoresis/RP‐HPLC for proteomic analysis of human plasma depleted of multi high‐abundance proteins RL Moritz, AB Clippingdale, EA Kapp, JS Eddes, H Ji, S Gilbert, ... Proteomics 5 (13), 3402-3413, 2005 | 73 | 2005 |
Deriving statistical models for predicting peptide tandem MS product ion intensities F Schütz, EA Kapp, RJ Simpson, TP Speed Biochemical Society Transactions 31 (6), 1479-1483, 2003 | 69 | 2003 |
CHOMPER: A bioinformatic tool for rapid validation of tandem mass spectrometry search results associated with high‐throughput proteomic strategies JS Eddes, EA Kapp, DF Frecklington, LM Connolly, MJ Layton, RL Moritz, ... PROTEOMICS: International Edition 2 (9), 1097-1103, 2002 | 68 | 2002 |
Extracellular remodelling during oncogenic Ras-induced epithelial-mesenchymal transition facilitates MDCK cell migration RA Mathias, YS Chen, B Wang, H Ji, EA Kapp, RL Moritz, HJ Zhu, ... Journal of proteome research 9 (2), 1007-1019, 2010 | 66 | 2010 |
Differential expression of pathogen-recognition molecules between dendritic cell subsets revealed by plasma membrane proteomic analysis E Segura, E Kapp, N Gupta, J Wong, J Lim, H Ji, WR Heath, R Simpson, ... Molecular immunology 47 (9), 1765-1773, 2010 | 62 | 2010 |
Selenium levels in serum, red blood cells, and cerebrospinal fluid of Alzheimer’s disease patients: a report from the Australian Imaging, Biomarker & Lifestyle Flagship Study … BR Cardoso, DJ Hare, AI Bush, QX Li, CJ Fowler, CL Masters, RN Martins, ... Journal of Alzheimer's Disease 57 (1), 183-193, 2017 | 58 | 2017 |