| MEMOTE for standardized genome-scale metabolic model testing C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... Nature biotechnology 38 (3), 272-276, 2020 | 349 | 2020 |
| Robustness and evolvability in genetic regulatory networks M Aldana, E Balleza, S Kauffman, O Resendiz Journal of theoretical biology 245 (3), 433-448, 2007 | 347 | 2007 |
| Regulation by transcription factors in bacteria: beyond description E Balleza, LN Lopez-Bojorquez, A Martínez-Antonio, O Resendis-Antonio, ... FEMS microbiology reviews 33 (1), 133-151, 2008 | 251 | 2008 |
| MICOM: metagenome-scale modeling to infer metabolic interactions in the gut microbiota C Diener, SM Gibbons, O Resendis-Antonio MSystems 5 (1), 10.1128/msystems. 00606-19, 2020 | 150 | 2020 |
| Hierarchical agglomerative clustering ML Zepeda-Mendoza, O Resendis-Antonio Encyclopedia of systems biology 43 (1), 886-887, 2013 | 131 | 2013 |
| Modular analysis of the transcriptional regulatory network of E. coli O Resendis-Antonio, JA Freyre-Gonzalez, R Menchaca-Mendez, ... TRENDS in Genetics 21 (1), 16-20, 2005 | 127 | 2005 |
| Metabolic reconstruction and modeling of nitrogen fixation in Rhizobium etli O Resendis-Antonio, JL Reed, S Encarnación, J Collado-Vides, ... PLoS computational biology 3 (10), e192, 2007 | 114 | 2007 |
| Distinct Microbes, Metabolites, and Ecologies Define the Microbiome in Deficient and Proficient Mismatch Repair Colorectal Cancers VL Hale, P Jeraldo, J Chen, M Mundy, J Yao, S Priya, G Keeney, K Lyke, ... bioRxiv, 346510, 2018 | 108 | 2018 |
| Identification of regulatory network topological units coordinating the genome-wide transcriptional response to glucose in Escherichia coli RM Gutierrez-Ríos, JA Freyre-Gonzalez, O Resendis, J Collado-Vides, ... BMC microbiology 7, 1-18, 2007 | 84 | 2007 |
| Modeling core metabolism in cancer cells: surveying the topology underlying the Warburg effect O Resendis-Antonio, A Checa, S Encarnación PloS one 5 (8), e12383, 2010 | 83 | 2010 |
| Evolution of centrality measurements for the detection of essential proteins in biological networks M Jalili, A Salehzadeh-Yazdi, S Gupta, O Wolkenhauer, M Yaghmaie, ... Frontiers in physiology 7, 375, 2016 | 80 | 2016 |
| Quantitative proteomic analysis of extracellular vesicle subgroups isolated by an optimized method combining polymer‐based precipitation and size exclusion chromatography JA Martínez‐Greene, K Hernández‐Ortega, R Quiroz‐Baez, ... Journal of extracellular vesicles 10 (6), e12087, 2021 | 67 | 2021 |
| Synthesis of multi-omic data and community metabolic models reveals insights into the role of hydrogen sulfide in colon cancer VL Hale, P Jeraldo, M Mundy, J Yao, G Keeney, N Scott, EH Cheek, ... Methods 149, 59-68, 2018 | 64 | 2018 |
| Proteomic patterns of cervical cancer cell lines, a network perspective JC Higareda-Almaraz, MR Enríquez-Gasca, M Hernández-Ortiz, ... BMC systems biology 5, 1-16, 2011 | 63 | 2011 |
| Memote: A community driven effort towards a standardized genome-scale metabolic model test suite C Lieven, ME Beber, BG Olivier, FT Bergmann, M Ataman, P Babaei, ... BioRxiv, 350991, 2018 | 59 | 2018 |
| Systems biology of bacterial nitrogen fixation: high-throughput technology and its integrative description with constraint-based modeling O Resendis-Antonio, M Hernández, E Salazar, S Contreras, GM Batallar, ... BMC Systems Biology 5, 1-15, 2011 | 51 | 2011 |
| Host-microbiome interaction and cancer: potential application in precision medicine AV Contreras, B Cocom-Chan, G Hernandez-Montes, T Portillo-Bobadilla, ... Frontiers in physiology 7, 606, 2016 | 47 | 2016 |
| Functional modules, structural topology, and optimal activity in metabolic networks O Resendis-Antonio, M Hernández, Y Mora, S Encarnación Public Library of Science 8 (10), e1002720, 2012 | 39 | 2012 |
| Unveiling functional heterogeneity in breast cancer multicellular tumor spheroids through single-cell RNA-seq EA Muciño-Olmos, A Vázquez-Jiménez, U Avila-Ponce de León, ... Scientific reports 10 (1), 12728, 2020 | 34 | 2020 |
| Modeling metabolism: a window toward a comprehensive interpretation of networks in cancer O Resendis-Antonio, C González-Torres, G Jaime-Munoz, ... Seminars in cancer biology 30, 79-87, 2015 | 34 | 2015 |
Sergio Encarnación Investigador Titular, Centro de Ciencias Genómicas, UNAM在 ccg.unam.mx 的电子邮件经过验证
