Single-cell map of diverse immune phenotypes in the breast tumor microenvironment E Azizi, AJ Carr, G Plitas, AE Cornish, C Konopacki, S Prabhakaran, ... Cell, 2018 | 1601 | 2018 |
The Mycobacterium tuberculosis regulatory network and hypoxia JE Galagan, K Minch*, M Peterson*, A Lyubetskaya*, E Azizi*, L Sweet*, ... Nature 499 (7457), 178-183, 2013 | 476 | 2013 |
A gene–environment-induced epigenetic program initiates tumorigenesis D Alonso-Curbelo, YJ Ho, C Burdziak, JLV Maag, JP Morris IV, ... Nature 590 (7847), 642-648, 2021 | 164 | 2021 |
Dirichlet process mixture model for correcting technical variation in single-cell gene expression data S Prabhakaran*, E Azizi*, A Carr, D Pe’er Proceedings of The 33rd International Conference on Machine Learning (ICML …, 2016 | 129 | 2016 |
Cohesin members Stag1 and Stag2 display distinct roles in chromatin accessibility and topological control of HSC self-renewal and differentiation AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ... Cell stem cell 25 (5), 682-696. e8, 2019 | 116 | 2019 |
IL-2 production by self-reactive CD4 thymocytes scales regulatory T cell generation in the thymus S Hemmers, M Schizas, E Azizi, S Dikiy, Y Zhong, Y Feng, G Altan-Bonnet, ... Journal of Experimental Medicine, 2019 | 82 | 2019 |
Dissecting the treatment-naive ecosystem of human melanoma brain metastasis J Biermann, JC Melms, AD Amin, Y Wang, LA Caprio, A Karz, S Tagore, ... Cell 185 (14), 2591-2608. e30, 2022 | 73 | 2022 |
Mapping the evolution of T cell states during response and resistance to adoptive cellular therapy P Bachireddy*, E Azizi*, C Burdziak, VN Nguyen, C Ennis, K Maurer, ... Cell Reports 37 (6), 2021 | 45 | 2021 |
Bayesian inference for single-cell clustering and imputing E Azizi*, S Prabhakaran*, A Carr, D Pe'er Genomics and Computational Biology 3 (1), e46-e46, 2017 | 43 | 2017 |
The Neurospora Transcription Factor ADV-1 Transduces Light Signals and Temporal Information to Control Rhythmic Expression of Genes Involved in Cell Fusion R Dekhang, C Wu, KM Smith, TM Lamb, M Peterson, EL Bredeweg, ... G3: Genes, Genomes, Genetics 7 (1), 129-142, 2017 | 43 | 2017 |
Single-cell map of diverse immune phenotypes in the breast tumor 611 microenvironment E Azizi Cell 174 (1293-1308), e36, 2018 | 30 | 2018 |
Decoding ChIP-seq with a double-binding signal refines binding peaks to single-nucleotides and predicts cooperative interaction ALC Gomes, T Abeel, M Peterson, E Azizi, A Lyubetskaya, L Carvalho, ... Genome research 24 (10), 1686-1697, 2014 | 28 | 2014 |
Multimodal single-cell and whole-genome sequencing of small, frozen clinical specimens Y Wang, JL Fan, JC Melms, AD Amin, Y Georgis, I Barrera, P Ho, ... Nature genetics 55 (1), 19-25, 2023 | 25* | 2023 |
A Nonparametric Multi-view Model for Estimating Cell Type-Specific Gene Regulatory Networks C Burdziak*, E Azizi*, S Prabhakaran, D Pe'er arXiv preprint arXiv:1902.08138, 2019 | 17 | 2019 |
Notch3 signaling promotes tumor cell adhesion and progression in a murine epithelial ovarian cancer model JC Price, E Azizi, LA Naiche, JG Parvani, P Shukla, S Kim, JK Slack-Davis, ... PloS one 15 (6), e0233962, 2020 | 14 | 2020 |
Learning modular structures from network data and node variables E Azizi, E Airoldi, J Galagan Proceedings of the 31st International Conference on Machine Learning (ICML …, 2014 | 12 | 2014 |
Deep generative modeling of sample-level heterogeneity in single-cell genomics P Boyeau, J Hong, A Gayoso, M Kim, JL McFaline-Figueroa, MI Jordan, ... BioRxiv, 2022.10. 04.510898, 2022 | 10 | 2022 |
Stag1 and Stag2 regulate cell fate decisions in hematopoiesis through non-redundant topological control AD Viny, RL Bowman, Y Liu, VP Lavallée, SE Eisman, W Xiao, ... bioRxiv, 581868, 2019 | 6 | 2019 |
Joint Learning of Modular Structures from Multiple Data Types E Azizi NIPS 2013 Workshop: Frontiers of Network Analysis: Methods, Models, and …, 2013 | 5 | 2013 |
Starfysh integrates spatial transcriptomic and histologic data to reveal heterogeneous tumor–immune hubs S He, Y Jin, A Nazaret, L Shi, X Chen, S Rampersaud, BS Dhillon, ... Nature Biotechnology, 1-13, 2024 | 4* | 2024 |