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Tianyin Zhou
Tianyin Zhou
Google
在 usc.edu 的电子邮件经过验证
标题
引用次数
引用次数
年份
Absence of a simple code: how transcription factors read the genome
M Slattery, T Zhou, L Yang, ACD Machado, R Gordân, R Rohs
Trends in biochemical sciences 39 (9), 381-399, 2014
5822014
Cofactor binding evokes latent differences in DNA binding specificity between Hox proteins
M Slattery, T Riley, P Liu, N Abe, P Gomez-Alcala, I Dror, T Zhou, R Rohs, ...
Cell 147 (6), 1270-1282, 2011
5532011
Genomic regions flanking E-box binding sites influence DNA binding specificity of bHLH transcription factors through DNA shape
R Gordân, N Shen, I Dror, T Zhou, J Horton, R Rohs, ML Bulyk
Cell reports 3 (4), 1093-1104, 2013
3652013
DNAshape: a method for the high-throughput prediction of DNA structural features on a genomic scale
T Zhou, L Yang, Y Lu, I Dror, AC Dantas Machado, T Ghane, R Di Felice, ...
Nucleic acids research 41 (W1), W56-W62, 2013
3282013
Quantitative modeling of transcription factor binding specificities using DNA shape
T Zhou, N Shen, L Yang, N Abe, J Horton, RS Mann, HJ Bussemaker, ...
Proceedings of the National Academy of Sciences 112 (15), 4654-4659, 2015
2582015
Deconvolving the recognition of DNA shape from sequence
N Abe, I Dror, L Yang, M Slattery, T Zhou, HJ Bussemaker, R Rohs, ...
Cell 161 (2), 307-318, 2015
2032015
Probing DNA shape and methylation state on a genomic scale with DNase I
A Lazarovici, T Zhou, A Shafer, AC Dantas Machado, TR Riley, ...
Proceedings of the National Academy of Sciences 110 (16), 6376-6381, 2013
2012013
DNAshapeR: an R/Bioconductor package for DNA shape prediction and feature encoding
TP Chiu, F Comoglio, T Zhou, L Yang, R Paro, R Rohs
Bioinformatics 32 (8), 1211-1213, 2016
1562016
Evolving insights on how cytosine methylation affects protein–DNA binding
AC Dantas Machado, T Zhou, S Rao, P Goel, C Rastogi, A Lazarovici, ...
Briefings in functional genomics 14 (1), 61-73, 2015
1442015
TFBSshape: a motif database for DNA shape features of transcription factor binding sites
L Yang, T Zhou, I Dror, A Mathelier, WW Wasserman, R Gordân, R Rohs
Nucleic acids research 42 (D1), D148-D155, 2014
1392014
GBshape: a genome browser database for DNA shape annotations
TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ...
Nucleic acids research 43 (D1), D103-D109, 2015
632015
Covariation between homeodomain transcription factors and the shape of their DNA binding sites
I Dror, T Zhou, Y Mandel-Gutfreund, R Rohs
Nucleic acids research 42 (1), 430-441, 2014
552014
Analysis of genetic variation indicates DNA shape involvement in purifying selection
X Wang, T Zhou, Z Wunderlich, MT Maurano, AH DePace, SV Nuzhdin, ...
Molecular biology and evolution 35 (8), 1958-1967, 2018
182018
Genes under positive selection in Mycobacterium tuberculosis
Y Zhang, H Zhang, T Zhou, Y Zhong, Q Jin
Computational Biology and Chemistry 35 (5), 319-322, 2011
152011
15 TFBSshape: a motif database for DNA shape features of transcription factor binding sites
L Yang, I Dror, T Zhou, A Mathelier, WW Wasserman, R Gordân, R Rohs
Journal of Biomolecular Structure and Dynamics 33 (sup1), 9-9, 2015
12015
28 GBshape: a genome browser database for DNA shape annotations
TP Chiu, L Yang, T Zhou, BJ Main, SCJ Parker, SV Nuzhdin, TD Tullius, ...
Journal of Biomolecular Structure and Dynamics 33 (sup1), 16-16, 2015
2015
22 Evolving insights on how cytosine methylation affects protein-DNA binding
S Rao, A Carolina Dantas Machado, T Zhou, C Rastogi, HJ Bussemaker, ...
Journal of Biomolecular Structure and Dynamics 33 (sup1), 12-12, 2015
2015
Genome-wide Studies Reveal the Function and Evolution of DNA Shape
T Zhou
University of Southern California, 2014
2014
373 Structural insights for HIV-1 therapeutic strategies targeting Vif
T Passioura, H Suga, S Sarbajna, SC West, D Schraivogel, G Meister, ...
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