SRST2: Rapid genomic surveillance for public health and hospital microbiology labs M Inouye, H Dashnow, LA Raven, MB Schultz, BJ Pope, T Tomita, J Zobel, ... Genome medicine 6, 1-16, 2014 | 1022* | 2014 |
STRetch: detecting and discovering pathogenic short tandem repeat expansions H Dashnow, M Lek, B Phipson, A Halman, S Sadedin, A Lonsdale, ... Genome biology 19, 1-13, 2018 | 136 | 2018 |
Cpipe: a shared variant detection pipeline designed for diagnostic settings SP Sadedin, H Dashnow, PA James, M Bahlo, DC Bauer, A Lonie, ... Genome medicine 7, 1-10, 2015 | 101 | 2015 |
Effective variant filtering and expected candidate variant yield in studies of rare human disease BS Pedersen, JM Brown, H Dashnow, AD Wallace, M Velinder, ... NPJ Genomic Medicine 6 (1), 60, 2021 | 60 | 2021 |
Elegant SciPy: The Art of Scientific Python J Nunez-Iglesias, S Van der Walt, H Dashnow " O'Reilly Media, Inc.", 2017 | 28 | 2017 |
STRling: a k-mer counting approach that detects short tandem repeat expansions at known and novel loci H Dashnow, BS Pedersen, L Hiatt, J Brown, SJ Beecroft, G Ravenscroft, ... Genome Biology 23 (1), 257, 2022 | 27 | 2022 |
A clinically driven variant prioritization framework outperforms purely computational approaches for the diagnostic analysis of singleton WES data Z Stark, H Dashnow, S Lunke, TY Tan, A Yeung, S Sadedin, N Thorne, ... European Journal of Human Genetics 25 (11), 1268-1272, 2017 | 27 | 2017 |
Characterization and visualization of tandem repeats at genome scale E Dolzhenko, A English, H Dashnow, G De Sena Brandine, T Mokveld, ... Nature Biotechnology, 1-9, 2024 | 26* | 2024 |
Ten simple rules for writing a PLOS ten simple rules article H Dashnow, A Lonsdale, PE Bourne PLoS Computational Biology 10 (10), e1003858, 2014 | 26 | 2014 |
Bionitio: demonstrating and facilitating best practices for bioinformatics command-line software P Georgeson, A Syme, C Sloggett, J Chung, H Dashnow, M Milton, ... GigaScience 8 (9), giz109, 2019 | 17 | 2019 |
Sequencing and characterizing short tandem repeats in the human genome HA Tanudisastro, IW Deveson, H Dashnow, DG MacArthur Nature Reviews Genetics, 1-16, 2024 | 10 | 2024 |
Ten simple rules for a bioinformatics journal club A Lonsdale, J Sietsma Penington, T Rice, M Walker, H Dashnow PLoS Computational Biology 12 (1), e1004526, 2016 | 10 | 2016 |
Genotyping microsatellites in next-generation sequencing data H Dashnow, S Tan, D Das, S Easteal, A Oshlack Bmc Bioinformatics 16 (Suppl 2), A5, 2015 | 10 | 2015 |
Development of transgenic mice containing an introduced stop codon on the human methylmalonyl-CoA mutase locus NE Buck, H Dashnow, JJ Pitt, LR Wood, HL Peters Public Library of Science 7 (9), e44974, 2012 | 9 | 2012 |
Chronic Lactation Insufficiency Is a Public Health Issue: Commentary on “We Need Patient-Centered Research in Breastfeeding Medicine” by Stuebe. Breastfeed Med 2021; 16: 349–350. H Shere, L Weijer, H Dashnow, LE Moreno, S Foxworthy Scott, H Baker Breastfeeding Medicine 16 (12), 933-934, 2021 | 8 | 2021 |
Nanopore sequencing of 1000 Genomes Project samples to build a comprehensive catalog of human genetic variation JA Gustafson, SB Gibson, N Damaraju, MPG Zalusky, K Hoekzema, ... medRxiv, 2024 | 7 | 2024 |
RNA‐seq analysis in R B Phipson, A Trigos, M Ritchie, S Su, M Doyle, H Dashnow, C Law | 3 | 2020 |
Pooled-parent exome sequencing to prioritise de novo variants in genetic disease H Dashnow, KM Bell, Z Stark, TY Tan, SM White, A Oshlack bioRxiv, 601740, 2019 | 3 | 2019 |
1: RNA-Seq reads to counts M Doyle, B Phipson, H Dashnow Galaxy Training Network, 2019 | 3* | 2019 |
2: RNA-seq counts to genes M Doyle, B Phipson, J Maksimovic, A Trigos, M Ritchie, H Dashnow, S Su, ... Galaxy Training Network, 2019 | 1* | 2019 |