Molecular surface recognition: determination of geometric fit between proteins and their ligands by correlation techniques. E Katchalski-Katzir, I Shariv, M Eisenstein, AA Friesem, C Aflalo, ... Proceedings of the National Academy of Sciences 89 (6), 2195-2199, 1992 | 1372 | 1992 |
GRAMM-X public web server for protein–protein docking A Tovchigrechko, IA Vakser Nucleic acids research 34 (suppl_2), W310-W314, 2006 | 846 | 2006 |
CAPRI: a critical assessment of predicted interactions J Janin, K Henrick, J Moult, LT Eyck, MJE Sternberg, S Vajda, I Vakser, ... Proteins: Structure, Function, and Bioinformatics 52 (1), 2-9, 2003 | 786 | 2003 |
Residue frequencies and pairing preferences at protein–protein interfaces F Glaser, DM Steinberg, IA Vakser, N Ben‐Tal Proteins: Structure, Function, and Bioinformatics 43 (2), 89-102, 2001 | 478 | 2001 |
Identification of the binding site on cytochrome P450 2B4 for cytochrome b 5 and cytochrome P450 reductase A Bridges, L Gruenke, YT Chang, IA Vakser, G Loew, L Waskell Journal of Biological Chemistry 273 (27), 17036-17049, 1998 | 336 | 1998 |
Protein-protein docking: From interaction to interactome IA Vakser Biophysical journal 107 (8), 1785-1793, 2014 | 324 | 2014 |
Protein docking for low-resolution structures IA Vakser Protein Engineering, Design and Selection 8 (4), 371-378, 1995 | 311 | 1995 |
Hydrophobic docking: a proposed enhancement to molecular recognition techniques IA Vakser, C Aflalo Proteins: Structure, Function, and Bioinformatics 20 (4), 320-329, 1994 | 244 | 1994 |
Templates are available to model nearly all complexes of structurally characterized proteins PJ Kundrotas, Z Zhu, J Janin, IA Vakser Proceedings of the National Academy of Sciences 109 (24), 9438-9441, 2012 | 220 | 2012 |
A systematic study of low-resolution recognition in protein–protein complexes IA Vakser, OG Matar, CF Lam Proceedings of the National Academy of Sciences 96 (15), 8477-8482, 1999 | 219 | 1999 |
Development and testing of an automated approach to protein docking A Tovchigrechko, IA Vakser Proteins: Structure, Function, and Bioinformatics 60 (2), 296-301, 2005 | 197 | 2005 |
Prediction of homoprotein and heteroprotein complexes by protein docking and template‐based modeling: a CASP‐CAPRI experiment MF Lensink, S Velankar, A Kryshtafovych, SY Huang, ... Proteins: Structure, Function, and Bioinformatics 84, 323-348, 2016 | 168 | 2016 |
Evaluation of GRAMM low‐resolution docking methodology on the hemagglutinin‐antibody complex IA Vakser Proteins: Structure, Function, and Bioinformatics 29 (S1), 226-230, 1997 | 158 | 1997 |
Low‐resolution docking: prediction of complexes for underdetermined structures IA Vakser Biopolymers 39 (3), 455-464, 1996 | 156 | 1996 |
Docking of protein models A Tovchigrechko, CA Wells, IA Vakser Protein Science 11 (8), 1888-1896, 2002 | 127 | 2002 |
Blind prediction of homo‐and hetero‐protein complexes: The CASP13‐CAPRI experiment MF Lensink, G Brysbaert, N Nadzirin, S Velankar, RAG Chaleil, T Gerguri, ... Proteins: Structure, Function, and Bioinformatics 87 (12), 1200-1221, 2019 | 117 | 2019 |
How common is the funnel‐like energy landscape in protein‐protein interactions? A Tovchigrechko, IA Vakser Protein science 10 (8), 1572-1583, 2001 | 108 | 2001 |
Dockground resource for studying protein–protein interfaces D Douguet, HC Chen, A Tovchigrechko, IA Vakser Bioinformatics 22 (21), 2612-2618, 2006 | 107 | 2006 |
Docking by structural similarity at protein‐protein interfaces R Sinha, PJ Kundrotas, IA Vakser Proteins: Structure, Function, and Bioinformatics 78 (15), 3235-3241, 2010 | 103 | 2010 |
Long-distance potentials: an approach to the multiple-minima problem in ligand-receptor interaction IA Vakser Protein Engineering, Design and Selection 9 (1), 37-41, 1996 | 97 | 1996 |