The effect of ambiguous data on phylogenetic estimates obtained by maximum likelihood and Bayesian inference AR Lemmon, JM Brown, K Stanger-Hall, EM Lemmon Systematic biology 58 (1), 130-145, 2009 | 469 | 2009 |
The importance of data partitioning and the utility of Bayes factors in Bayesian phylogenetics JM Brown, AR Lemmon Systematic Biology 56 (4), 643-655, 2007 | 381 | 2007 |
When trees grow too long: investigating the causes of highly inaccurate Bayesian branch-length estimates JM Brown, SM Hedtke, AR Lemmon, EM Lemmon Systematic biology 59 (2), 145-161, 2010 | 245 | 2010 |
Parent-offspring coadaptation and the dual genetic control of maternal care AF Agrawal, ED Brodie III, J Brown Science 292 (5522), 1710-1712, 2001 | 201 | 2001 |
Newly discovered sister lineage sheds light on early ant evolution C Rabeling, JM Brown, M Verhaagh Proceedings of the National Academy of Sciences 105 (39), 14913-14917, 2008 | 188 | 2008 |
Phylogenomics reveals ancient gene tree discordance in the amphibian tree of life PM Hime, AR Lemmon, ECM Lemmon, E Prendini, JM Brown, ... Systematic biology 70 (1), 49-66, 2021 | 160 | 2021 |
Bayes factors unmask highly variable information content, bias, and extreme influence in phylogenomic analyses JM Brown, RC Thomson Systematic Biology 66 (4), 517-530, 2017 | 157 | 2017 |
Human adipose tissue as a reservoir for memory CD4+ T cells and HIV J Couturier, JW Suliburk, JM Brown, DJ Luke, N Agarwal, X Yu, C Nguyen, ... Aids 29 (6), 667-674, 2015 | 130 | 2015 |
Source identification in two criminal cases using phylogenetic analysis of HIV-1 DNA sequences DI Scaduto, JM Brown, WC Haaland, DJ Zwickl, DM Hillis, ML Metzker Proceedings of the National Academy of Sciences 107 (50), 21242-21247, 2010 | 118 | 2010 |
Impact of model violations on the inference of species boundaries under the multispecies coalescent AJ Barley, JM Brown, RC Thomson Systematic Biology 67 (2), 269-284, 2018 | 94 | 2018 |
Poor fit to the multispecies coalescent is widely detectable in empirical data NM Reid, SM Hird, JM Brown, TA Pelletier, JD McVay, JD Satler, ... Systematic Biology 63 (3), 322-333, 2014 | 92 | 2014 |
Can we identify genes with increased phylogenetic reliability? VP Doyle, RE Young, GJP Naylor, JM Brown Systematic Biology, 2015 | 89 | 2015 |
A Phylogenomic Approach to Vertebrate Phylogeny Supports a Turtle-Archosaur Affinity and a Possible Paraphyletic Lissamphibia JJ Fong, JM Brown, MK Fujita, B Boussau PloS one 7 (11), e48990, 2012 | 78 | 2012 |
Detection of implausible phylogenetic inferences using posterior predictive assessment of model fit JM Brown Systematic biology 63 (3), 334-348, 2014 | 76 | 2014 |
Variation across mitochondrial gene trees provides evidence for systematic error: how much gene tree variation is biological? EJ Richards, JM Brown, AJ Barley, RA Chong, RC Thomson Systematic biology 67 (5), 847-860, 2018 | 58 | 2018 |
Predictive approaches to assessing the fit of evolutionary models JM Brown Systematic biology 63 (3), 289-292, 2014 | 52 | 2014 |
Evaluating model performance in evolutionary biology JM Brown, RC Thomson Annual Review of Ecology, Evolution, and Systematics 49 (1), 95-114, 2018 | 48 | 2018 |
PuMA: Bayesian analysis of partitioned (and unpartitioned) model adequacy JM Brown, R ElDabaje Bioinformatics 25 (4), 537-538, 2009 | 38 | 2009 |
P3: Phylogenetic Posterior Prediction in RevBayes S Höhna, LM Coghill, GG Mount, RC Thomson, JM Brown Molecular biology and evolution 35 (4), 1028-1034, 2018 | 35 | 2018 |
Nonadaptive evolution of mitochondrial genome size B Boussau, JM Brown, MK Fujita Evolution 65 (9), 2706-2711, 2011 | 25 | 2011 |