| SPAdes: a new genome assembly algorithm and its applications to single-cell sequencing A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... Journal of computational biology 19 (5), 455-477, 2012 | 22337 | 2012 |
| Using SPAdes de novo assembler A Prjibelski, D Antipov, D Meleshko, A Lapidus, A Korobeynikov Current protocols in bioinformatics 70 (1), e102, 2020 | 1437 | 2020 |
| Assembling single-cell genomes and mini-metagenomes from chimeric MDA products S Nurk, A Bankevich, D Antipov, AA Gurevich, A Korobeynikov, A Lapidus, ... Journal of Computational Biology 20 (10), 714-737, 2013 | 1187 | 2013 |
| Versatile genome assembly evaluation with QUAST-LG A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich Bioinformatics 34 (13), i142-i150, 2018 | 838 | 2018 |
| Assembling genomes and mini-metagenomes from highly chimeric reads S Nurk, A Bankevich, D Antipov, A Gurevich, A Korobeynikov, A Lapidus, ... Research in Computational Molecular Biology: 17th Annual International …, 2013 | 817 | 2013 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data E Bushmanova, D Antipov, A Lapidus, AD Prjibelski GigaScience 8 (9), giz100, 2019 | 552 | 2019 |
| hybridSPAdes: an algorithm for hybrid assembly of short and long reads D Antipov, A Korobeynikov, JS McLean, PA Pevzner Bioinformatics 32 (7), 1009-1015, 2016 | 543 | 2016 |
| plasmidSPAdes: assembling plasmids from whole genome sequencing data D Antipov, N Hartwick, M Shen, M Raiko, A Lapidus, PA Pevzner Bioinformatics 32 (22), 3380-3387, 2016 | 521 | 2016 |
| Critical assessment of metagenome interpretation: the second round of challenges F Meyer, A Fritz, ZL Deng, D Koslicki, TR Lesker, A Gurevich, G Robertson, ... Nature methods 19 (4), 429-440, 2022 | 212 | 2022 |
| Metaviral SPAdes: assembly of viruses from metagenomic data D Antipov, M Raiko, A Lapidus, PA Pevzner Bioinformatics 36 (14), 4126-4129, 2020 | 180 | 2020 |
| Versatile genome assembly evaluation with QUAST-LG. Bioinformatics 34: i142–i150 A Mikheenko, A Prjibelski, V Saveliev, D Antipov, A Gurevich | 172 | 2018 |
| 492 Nikolenko SI, Pham S, Prjibelski AD, Pyshkin AV, Sirotkin AV, Vyahhi N, Tesler G, 493 Alekseyev MA, Pevzner PA. 2012. SPAdes: a new genome assembly algorithm and 494 its … A Bankevich, S Nurk, D Antipov, AA Gurevich, M Dvorkin, AS Kulikov, ... J Comput Biol 19, 455-77, 0 | 139 | |
| Thousands of previously unknown phages discovered in whole-community human gut metagenomes S Benler, N Yutin, D Antipov, M Rayko, S Shmakov, AB Gussow, ... Microbiome 9, 1-17, 2021 | 134 | 2021 |
| Plasmid detection and assembly in genomic and metagenomic data sets D Antipov, M Raiko, A Lapidus, PA Pevzner Genome research 29 (6), 961-968, 2019 | 131 | 2019 |
| rnaQUAST: a quality assessment tool for de novo transcriptome assemblies E Bushmanova, D Antipov, A Lapidus, V Suvorov, AD Prjibelski Bioinformatics 32 (14), 2210-2212, 2016 | 131 | 2016 |
| Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features N Yutin, S Benler, SA Shmakov, YI Wolf, I Tolstoy, M Rayko, D Antipov, ... Nature communications 12 (1), 1044, 2021 | 103 | 2021 |
| Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads A Bankevich, AV Bzikadze, M Kolmogorov, D Antipov, PA Pevzner Nature biotechnology 40 (7), 1075-1081, 2022 | 68 | 2022 |
| rnaSPAdes: a de novo transcriptome assembler and its application to RNA-Seq data. Gigascience 8: giz100 E Bushmanova, D Antipov, A Lapidus, AD Prjibelski | 61 | 2019 |
| Extending rnaSPAdes functionality for hybrid transcriptome assembly AD Prjibelski, GD Puglia, D Antipov, E Bushmanova, D Giordano, ... BMC bioinformatics 21, 1-9, 2020 | 33 | 2020 |
| Pathset graphs: a novel approach for comprehensive utilization of paired reads in genome assembly SK Pham, D Antipov, A Sirotkin, G Tesler, PA Pevzner, MA Alekseyev Journal of Computational Biology 20 (4), 359-371, 2013 | 28 | 2013 |
