| An efficient targeted nuclease strategy for high-resolution mapping of DNA binding sites PJ Skene, S Henikoff elife 6, e21856, 2017 | 1421 | 2017 |
| CpG islands influence chromatin structure via the CpG-binding protein Cfp1 JP Thomson, PJ Skene, J Selfridge, T Clouaire, J Guy, S Webb, ARW Kerr, ... Nature 464 (7291), 1082-1086, 2010 | 766 | 2010 |
| Neuronal MeCP2 is expressed at near histone-octamer levels and globally alters the chromatin state PJ Skene, RS Illingworth, S Webb, ARW Kerr, KD James, DJ Turner, ... Molecular cell 37 (4), 457-468, 2010 | 744 | 2010 |
| Targeted in situ genome-wide profiling with high efficiency for low cell numbers PJ Skene, JG Henikoff, S Henikoff Nature protocols 13 (5), 1006-1019, 2018 | 666 | 2018 |
| Cfp1 integrates both CpG content and gene activity for accurate H3K4me3 deposition in embryonic stem cells T Clouaire, S Webb, P Skene, R Illingworth, A Kerr, R Andrews, JH Lee, ... Genes & development 26 (15), 1714-1728, 2012 | 287 | 2012 |
| Histone variants in pluripotency and disease PJ Skene, S Henikoff Development 140 (12), 2513-2524, 2013 | 184 | 2013 |
| Simultaneous trimodal single-cell measurement of transcripts, epitopes, and chromatin accessibility using TEA-seq E Swanson, C Lord, J Reading, AT Heubeck, PC Genge, Z Thomson, ... Elife 10, e63632, 2021 | 157 | 2021 |
| A temporal threshold for formaldehyde crosslinking and fixation L Schmiedeberg, P Skene, A Deaton, A Bird PLoS One 4 (2), e4636, 2009 | 143 | 2009 |
| The nucleosomal barrier to promoter escape by RNA polymerase II is overcome by the chromatin remodeler Chd1 PJ Skene, AE Hernandez, M Groudine, S Henikoff elife 3, e02042, 2014 | 120 | 2014 |
| A simple method for generating high-resolution maps of genome-wide protein binding PJ Skene, S Henikoff Elife 4, e09225, 2015 | 113 | 2015 |
| Transcriptional regulatory networks underlying gene expression changes in Huntington's disease SA Ament, JR Pearl, JP Cantle, RM Bragg, PJ Skene, SR Coffey, ... Molecular systems biology 14 (3), e7435, 2018 | 69 | 2018 |
| CpG island chromatin is shaped by recruitment of ZF-CxxC proteins NP Blackledge, JP Thomson, PJ Skene Cold Spring Harbor perspectives in biology 5 (11), a018648, 2013 | 55 | 2013 |
| DUX4-induced histone variants H3. X and H3. Y mark DUX4 target genes for expression R Resnick, CJ Wong, DC Hamm, SR Bennett, PJ Skene, SB Hake, ... Cell reports 29 (7), 1812-1820. e5, 2019 | 47 | 2019 |
| Persistent serum protein signatures define an inflammatory subcategory of long COVID A Talla, SV Vasaikar, GL Szeto, MP Lemos, JL Czartoski, H MacMillan, ... Nature Communications 14 (1), 3417, 2023 | 41 | 2023 |
| Longitudinal immune dynamics of mild COVID-19 define signatures of recovery and persistence A Talla, SV Vasaikar, MP Lemos, Z Moodie, MP Lee Pebworth, ... BioRxiv, 2021.05. 26.442666, 2021 | 39 | 2021 |
| Transcript analysis of dinoflagellate plastid gene minicircles RER Nisbet, RG Hiller, ER Barry, P Skene, AC Barbrook, CJ Howe Protist 159 (1), 31-39, 2008 | 31 | 2008 |
| Mechanism of initiation site selection promoted by the human rhinovirus 2 internal ribosome entry site A Kaminski, TAA Pöyry, PJ Skene, RJ Jackson Journal of virology 84 (13), 6578-6589, 2010 | 22 | 2010 |
| Multimodal analysis for human ex vivo studies shows extensive molecular changes from delays in blood processing AK Savage, MV Gutschow, T Chiang, K Henderson, R Green, ... Iscience 24 (5), 2021 | 20 | 2021 |
| A comprehensive platform for analyzing longitudinal multi-omics data SV Vasaikar, AK Savage, Q Gong, E Swanson, A Talla, C Lord, ... Nature Communications 14 (1), 1684, 2023 | 14 | 2023 |
| CUT&RUN: Targeted in situ genome-wide profiling with high efficiency for low cell numbers PJ Skene, S Henikoff biorxiv, 193219, 2017 | 11 | 2017 |
