Hopfield networks is all you need H Ramsauer, B Schäfl, J Lehner, P Seidl, M Widrich, T Adler, L Gruber, ... arXiv preprint arXiv:2008.02217, 2020 | 467 | 2020 |
Bioinformatic and statistical analysis of adaptive immune repertoires V Greiff, E Miho, U Menzel, ST Reddy Trends in immunology 36 (11), 738-749, 2015 | 210 | 2015 |
A bioinformatic framework for immune repertoire diversity profiling enables detection of immunological status V Greiff, P Bhat, SC Cook, U Menzel, W Kang, ST Reddy Genome medicine 7, 1-15, 2015 | 195 | 2015 |
Computational strategies for dissecting the high-dimensional complexity of adaptive immune repertoires E Miho, A Yermanos, CR Weber, CT Berger, ST Reddy, V Greiff Frontiers in immunology 9, 224, 2018 | 190 | 2018 |
Systems analysis reveals high genetic and antigen-driven predetermination of antibody repertoires throughout B cell development V Greiff, U Menzel, E Miho, C Weber, R Riedel, S Cook, A Valai, T Lopes, ... Cell reports 19 (7), 1467-1478, 2017 | 172 | 2017 |
Adaptive Immune Receptor Repertoire Community recommendations for sharing immune-repertoire sequencing data F Rubelt, CE Busse, SAC Bukhari, JP Bürckert, E Mariotti-Ferrandiz, ... Nature immunology 18 (12), 1274-1278, 2017 | 169 | 2017 |
Mucosal or systemic microbiota exposures shape the B cell repertoire H Li, JP Limenitakis, V Greiff, B Yilmaz, O Schären, C Urbaniak, M Zünd, ... Nature 584 (7820), 274-278, 2020 | 159 | 2020 |
A compact vocabulary of paratope-epitope interactions enables predictability of antibody-antigen binding R Akbar, PA Robert, M Pavlović, JR Jeliazkov, I Snapkov, A Slabodkin, ... Cell Reports 34 (11), 2021 | 158 | 2021 |
Resident memory CD8 T cells persist for years in human small intestine R Bartolomé-Casado, OJB Landsverk, SK Chauhan, L Richter, D Phung, ... Journal of Experimental Medicine 216 (10), 2412-2426, 2019 | 133 | 2019 |
Modern hopfield networks and attention for immune repertoire classification M Widrich, B Schäfl, M Pavlović, H Ramsauer, L Gruber, M Holzleitner, ... Advances in neural information processing systems 33, 18832-18845, 2020 | 131* | 2020 |
Large-scale network analysis reveals the sequence space architecture of antibody repertoires E Miho, R Roškar, V Greiff, ST Reddy Nature communications 10 (1), 1321, 2019 | 130 | 2019 |
Learning the high-dimensional immunogenomic features that predict public and private antibody repertoires V Greiff, CR Weber, J Palme, U Bodenhofer, E Miho, U Menzel, ST Reddy The Journal of Immunology 199 (8), 2985-2997, 2017 | 115 | 2017 |
Animal immunization, in vitro display technologies, and machine learning for antibody discovery AH Laustsen, V Greiff, A Karatt-Vellatt, S Muyldermans, TP Jenkins Trends in Biotechnology 39 (12), 1263-1273, 2021 | 96 | 2021 |
In silico proof of principle of machine learning-based antibody design at unconstrained scale R Akbar, PA Robert, CR Weber, M Widrich, R Frank, M Pavlović, ... MAbs 14 (1), 2031482, 2022 | 90 | 2022 |
Single-cell BCR and transcriptome analysis after influenza infection reveals spatiotemporal dynamics of antigen-specific B cells NR Mathew, JK Jayanthan, IV Smirnov, JL Robinson, H Axelsson, ... Cell reports 35 (12), 2021 | 81 | 2021 |
High-throughput antibody engineering in mammalian cells by CRISPR/Cas9-mediated homology-directed mutagenesis DM Mason, CR Weber, C Parola, SM Meng, V Greiff, WJ Kelton, ... Nucleic acids research 46 (14), 7436-7449, 2018 | 79 | 2018 |
Immunoglobulin germline gene variation and its impact on human disease I Mikocziova, V Greiff, LM Sollid Genes & Immunity 22 (4), 205-217, 2021 | 72 | 2021 |
Progress and challenges for the machine learning-based design of fit-for-purpose monoclonal antibodies R Akbar, H Bashour, P Rawat, PA Robert, E Smorodina, TS Cotet, ... MAbs 14 (1), 2008790, 2022 | 71 | 2022 |
Mining adaptive immune receptor repertoires for biological and clinical information using machine learning V Greiff, G Yaari, LG Cowell Current Opinion in Systems Biology 24, 109-119, 2020 | 68 | 2020 |
Quantitative assessment of the robustness of next-generation sequencing of antibody variable gene repertoires from immunized mice V Greiff, U Menzel, U Haessler, SC Cook, S Friedensohn, TA Khan, ... BMC immunology 15, 1-14, 2014 | 68 | 2014 |