Critical assessment of automated flow cytometry data analysis techniques N Aghaeepour, G Finak, the FlowCAP Consortium, ... Nature methods, 2013 | 670 | 2013 |
Intersection of diverse neuronal genomes and neuropsychiatric disease: The Brain Somatic Mosaicism Network. MJ McConnell, JV Moran, A Abyzov, S Akbarian, T Bae, I Cortes-Ciriano, ... Science 356 (6336), eaal1641, 2017 | 252 | 2017 |
Inferring causal molecular networks: empirical assessment through a community-based effort SM Hill, LM Heiser, T Cokelaer, M Unger, NK Nesser, DE Carlin, Y Zhang, ... Nature Methods, 2016 | 243 | 2016 |
Long-term Outcomes and Predictive Ability of Simple Non-Invasive Scoring Systems in Patients with Non-Alcoholic Fatty Liver Disease R Younes, GP Caviglia, O Govaere, C Rosso, A Armandi, T Sanavia, ... Journal of Hepatology, 2021 | 132 | 2021 |
Limitations and challenges in protein stability prediction upon genome variations: towards future applications in precision medicine T Sanavia, G Birolo, L Montanucci, P Turina, E Capriotti, P Fariselli Computational and structural biotechnology journal 18, 1968-1979, 2020 | 114 | 2020 |
Synaptotagmin 4 regulates pancreatic β cell maturation by modulating the Ca2+ sensitivity of insulin secretion vesicles C Huang, EM Walker, PK Dadi, R Hu, Y Xu, W Zhang, T Sanavia, J Mun, ... Developmental cell 45 (3), 347-361. e5, 2018 | 100 | 2018 |
Predicting protein stability changes upon single-point mutation: a thorough comparison of the available tools on a new dataset C Pancotti, S Benevenuta, G Birolo, V Alberini, V Repetto, T Sanavia, ... Briefings in Bioinformatics, 2022 | 74 | 2022 |
An antisymmetric neural network to predict free energy changes in protein variants S Benevenuta, C Pancotti, P Fariselli, G Birolo, T Sanavia Journal of Physics D: Applied Physics 54 (24), 245403, 2021 | 46 | 2021 |
Necroptosis-driving genes RIPK1, RIPK3 and MLKL-p are associated with intratumoral CD3+ and CD8+ T cell density and predict prognosis in hepatocellular carcinoma L Nicolè, T Sanavia, R Cappellesso, V Maffeis, J Akiba, A Kawahara, ... Journal for immunotherapy of cancer 10 (3), 2022 | 41 | 2022 |
DNA methylation profiling reveals common signatures of tumorigenesis and defines epigenetic prognostic subtypes of canine Diffuse Large B-cell Lymphoma S Ferraresso, A Aricò, T Sanavia, S Da Ros, M Milan, L Cascione, ... Scientific Reports 7 (1), 11591, 2017 | 38 | 2017 |
A Crowdsourcing Approach to Developing and Assessing Prediction Algorithms for AML Prognosis DP Noren, BL Long, R Norel, K Rrhissorrakrai, K Hess, CW Hu, ... PLOS Comput Biol 12 (6), e1004890, 2016 | 38 | 2016 |
FunPat: function-based pattern analysis on RNA-seq time series data T Sanavia, F Finotello, B Di Camillo BMC genomics 16, 1-13, 2015 | 36 | 2015 |
Oncofetal gene SALL4 and prognosis in cancer: A systematic review with meta-analysis L Nicolè, T Sanavia, N Veronese, R Cappellesso, C Luchini, P Dabrilli, ... Oncotarget 2, 2b, 2017 | 34 | 2017 |
Effect of size and heterogeneity of samples on biomarker discovery: synthetic and real data assessment. B Di Camillo, T Sanavia, M Martini, G Jurman, F Sambo, A Barla, ... PloS one 7 (3), e32200, 2012 | 32 | 2012 |
A Deep-Learning Sequence-Based Method to Predict Protein Stability Changes upon Genetic Variations C Pancotti, S Benevenuta, V Repetto, G Birolo, E Capriotti, T Sanavia, ... Genes 12 (6), 911, 2021 | 30 | 2021 |
MiR-200c-3p contrasts PD-L1 induction by combinatorial therapies and slows proliferation of epithelial ovarian cancer through downregulation of β-catenin and c-myc E Anastasiadou, E Messina, T Sanavia, L Mundo, F Farinella, S Lazzi, ... Cells 10 (3), 519, 2021 | 28 | 2021 |
Protein stability perturbation contributes to the loss of function in haploinsufficient genes G Birolo, S Benevenuta, P Fariselli, E Capriotti, E Giorgio, T Sanavia Frontiers in Molecular Biosciences 8, 10, 2021 | 26 | 2021 |
Deep learning methods to predict amyotrophic lateral sclerosis disease progression C Pancotti, G Birolo, C Rollo, T Sanavia, B Di Camillo, U Manera, A Chiò, ... Scientific Reports 12, 13738, 2022 | 24 | 2022 |
MiR-21 over-expression and Programmed Cell Death 4 down-regulation features malignant pleural mesothelioma L Nicolè, R Cappellesso, T Sanavia, V Guzzardo, A Fassina Oncotarget 9, 17300-17308, 2018 | 19 | 2018 |
Improving biomarker list stability by integration of biological knowledge in the learning process T Sanavia, F Aiolli, G Da San Martino, A Bisognin, B Di Camillo BMC bioinformatics 13, 1-11, 2012 | 18 | 2012 |