| Evolution on the backbone: Apocynaceae phylogenomics and new perspectives on growth forms, flowers, and fruits M Fishbein, T Livshultz, SCK Straub, AO Simões, J Boutte, A McDonnell, ... American journal of botany 105 (3), 495-513, 2018 | 87 | 2018 |
| Long-read assembly of the Brassica napus reference genome Darmor-bzh M Rousseau-Gueutin, C Belser, C Da Silva, G Richard, B Istace, ... GigaScience 9 (12), giaa137, 2020 | 79 | 2020 |
| The evolutionary fate of the chloroplast and nuclear rps16 genes as revealed through the sequencing and comparative analyses of four novel legume chloroplast genomes … J Keller, M Rousseau-Gueutin, GE Martin, J Morice, J Boutte, E Coissac, ... DNA Research 24 (4), 343-358, 2017 | 71 | 2017 |
| The chloroplast genome of the hexaploid Spartina maritima (Poaceae, Chloridoideae): Comparative analyses and molecular dating M Rousseau-Gueutin, S Bellot, GE Martin, J Boutte, H Chelaifa, O Lima, ... Molecular phylogenetics and evolution 93, 5-16, 2015 | 70 | 2015 |
| Transcriptome de novo assembly from next-generation sequencing and comparative analyses in the hexaploid salt marsh species Spartina maritima and Spartina alterniflora (Poaceae) JF De Carvalho, J Poulain, C Da Silva, P Wincker, S Michon-Coudouel, ... Heredity 110 (2), 181-193, 2013 | 68 | 2013 |
| Evolution at the tips: Asclepias phylogenomics and new perspectives on leaf surfaces M Fishbein, SCK Straub, J Boutte, K Hansen, RC Cronn, A Liston American journal of botany 105 (3), 514-524, 2018 | 29 | 2018 |
| Haplotype Detection from Next-Generation Sequencing in High-Ploidy-Level Species: 45S rDNA Gene Copies in the Hexaploid Spartina maritima J Boutte, B Aliaga, O Lima, JF De Carvalho, A Ainouche, J Macas, ... G3: Genes| Genomes| Genetics 6 (1), 29-40, 2016 | 27 | 2016 |
| Genome size variation and comparative genomics reveal intraspecific diversity in Brassica rapa J Boutte, L Maillet, T Chaussepied, S Letort, JM Aury, C Belser, F Boideau, ... Frontiers in plant science, 1579, 2020 | 26 | 2020 |
| Reference transcriptomes and detection of duplicated copies in hexaploid and allododecaploid Spartina species (Poaceae) J Boutte, J Ferreira de Carvalho, M Rousseau-Gueutin, J Poulain, ... Genome biology and evolution 8 (9), 3030-3044, 2016 | 25 | 2016 |
| Gene expression variation in natural populations of hexaploid and allododecaploid Spartina species (Poaceae) J Ferreira de Carvalho, J Boutte, P Bourdaud, H Chelaifa, K Ainouche, ... Plant Systematics and Evolution 303 (8), 1061-1079, 2017 | 21 | 2017 |
| Exploring the genome of the salt-marsh Spartina maritima (Poaceae, Chloridoideae) through BAC end sequence analysis J Ferreira de Carvalho, H Chelaifa, J Boutte, J Poulain, A Couloux, ... Plant molecular biology 83 (6), 591-606, 2013 | 15 | 2013 |
| Evolutionary dynamics of transposable elements and satellite DNAs in polyploid Spartina species D Giraud, O Lima, V Huteau, O Coriton, J Boutte, A Kovarik, AR Leitch, ... Plant Science 302, 110671, 2021 | 12 | 2021 |
| Evolution of DMSP (dimethylsulfoniopropionate) biosynthesis pathway: Origin and phylogenetic distribution in polyploid Spartina (Poaceae, Chloridoideae) H Rousseau, M Rousseau-Gueutin, X Dauvergne, J Boutte, G Simon, ... Molecular Phylogenetics and Evolution 114, 401-414, 2017 | 12 | 2017 |
| Impact of whole genome triplication on the evolutionary history and the functional dynamics of regulatory genes involved in Brassica self-incompatibility signalling pathway T Azibi, H Hadj-Arab, M Lodé, J Ferreira de Carvalho, G Trotoux, S Nègre, ... Plant Reproduction 33 (1), 43-58, 2020 | 11 | 2020 |
| Enabling evolutionary studies at multiple scales in Apocynaceae through Hyb‐Seq SCK Straub, J Boutte, M Fishbein, T Livshultz Applications in Plant Sciences 8 (11), e11400, 2020 | 10 | 2020 |
| NGS-Indel Coder: A pipeline to code indel characters in phylogenomic data with an example of its application in milkweeds (Asclepias) J Boutte, M Fishbein, A Liston, SCK Straub Molecular phylogenetics and evolution 139, 106534, 2019 | 7 | 2019 |
| NGS-Indel Coder v2. 0: A Streamlined Pipeline to Code Indel Characters in Phylogenomic Data J Boutte, M Fishbein, SCK Straub Plant Comparative Genomics, 61-72, 2022 | | 2022 |
| Identification et évolution des séquences orthologues par séquençage massif chez les polyploïdes J Boutte Université Rennes 1, 2015 | | 2015 |
