STRING 8—a global view on proteins and their functional interactions in 630 organisms LJ Jensen, M Kuhn, M Stark, S Chaffron, C Creevey, J Muller, T Doerks, ... Nucleic acids research 37 (suppl_1), D412-D416, 2009 | 2908 | 2009 |
Structure and function of the global ocean microbiome S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Science 348 (6237), 1261359, 2015 | 2425 | 2015 |
Population-level analysis of gut microbiome variation G Falony, M Joossens, S Vieira-Silva, J Wang, Y Darzi, K Faust, ... Science 352 (6285), 560-564, 2016 | 2140 | 2016 |
Eukaryotic plankton diversity in the sunlit ocean C De Vargas, S Audic, N Henry, J Decelle, F Mahé, R Logares, E Lara, ... Science 348 (6237), 1261605, 2015 | 1760 | 2015 |
Salmonella enterica serovar typhimurium exploits inflammation to compete with the intestinal microbiota B Stecher, R Robbiani, AW Walker, AM Westendorf, M Barthel, M Kremer, ... PLoS biology 5 (10), e244, 2007 | 1183 | 2007 |
Community proteogenomics reveals insights into the physiology of phyllosphere bacteria N Delmotte, C Knief, S Chaffron, G Innerebner, B Roschitzki, ... Proceedings of the National Academy of Sciences 106 (38), 16428-16433, 2009 | 921 | 2009 |
Determinants of community structure in the global plankton interactome G Lima-Mendez, K Faust, N Henry, J Decelle, S Colin, F Carcillo, ... Science 348 (6237), 1262073, 2015 | 871 | 2015 |
STRING 7—recent developments in the integration and prediction of protein interactions C Von Mering, LJ Jensen, M Kuhn, S Chaffron, T Doerks, B Krüger, B Snel, ... Nucleic acids research 35 (suppl_1), D358-D362, 2007 | 798 | 2007 |
Metaproteogenomic analysis of microbial communities in the phyllosphere and rhizosphere of rice C Knief, N Delmotte, S Chaffron, M Stark, G Innerebner, R Wassmann, ... The ISME journal 6 (7), 1378-1390, 2012 | 737 | 2012 |
Plankton networks driving carbon export in the oligotrophic ocean L Guidi, S Chaffron, L Bittner, D Eveillard, A Larhlimi, S Roux, Y Darzi, ... Nature 532 (7600), 465-470, 2016 | 716 | 2016 |
Patterns and ecological drivers of ocean viral communities JR Brum, JC Ignacio-Espinoza, S Roux, G Doulcier, SG Acinas, A Alberti, ... Science 348 (6237), 1261498, 2015 | 679 | 2015 |
A global network of coexisting microbes from environmental and whole-genome sequence data S Chaffron, H Rehrauer, J Pernthaler, C Von Mering Genome research 20 (7), 947-959, 2010 | 526 | 2010 |
Like will to like: abundances of closely related species can predict susceptibility to intestinal colonization by pathogenic and commensal bacteria B Stecher, S Chaffron, R Käppeli, S Hapfelmeier, S Freedrich, TC Weber, ... PLoS pathogens 6 (1), e1000711, 2010 | 488 | 2010 |
The Microbiota Mediates Pathogen Clearance from the Gut Lumen after Non-Typhoidal Salmonella Diarrhea K Endt, B Stecher, S Chaffron, E Slack, N Tchitchek, A Benecke, ... PLoS pathogens 6 (9), e1001097, 2010 | 408 | 2010 |
Species–function relationships shape ecological properties of the human gut microbiome S Vieira-Silva, G Falony, Y Darzi, G Lima-Mendez, R Garcia Yunta, ... Nature microbiology 1 (8), 1-8, 2016 | 344 | 2016 |
The use of next generation sequencing for improving food safety: Translation into practice B Jagadeesan, P Gerner-Smidt, MW Allard, S Leuillet, A Winkler, Y Xiao, ... Food microbiology 79, 96-115, 2019 | 303 | 2019 |
Population-level analysis of Blastocystis subtype prevalence and variation in the human gut microbiota RY Tito, S Chaffron, C Caenepeel, G Lima-Mendez, J Wang, ... Gut 68 (7), 1180-1189, 2019 | 190 | 2019 |
Cryptic and abundant marine viruses at the evolutionary origins of Earth’s RNA virome AA Zayed, JM Wainaina, G Dominguez-Huerta, E Pelletier, J Guo, ... Science 376 (6589), 156-162, 2022 | 157 | 2022 |
Tara Oceans coordinators S Sunagawa, LP Coelho, S Chaffron, JR Kultima, K Labadie, G Salazar, ... Bowler C, de Vargas C, Gorsky G, Grimsley N, Hingamp P, Iudicone D, Jaillon …, 2015 | 148 | 2015 |
Mechanically induced development and maturation of human intestinal organoids in vivo HM Poling, D Wu, N Brown, M Baker, TA Hausfeld, N Huynh, S Chaffron, ... Nature biomedical engineering 2 (6), 429-442, 2018 | 101 | 2018 |