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Alan R. Pacheco
Alan R. Pacheco
在 biol.ethz.ch 的电子邮件经过验证
标题
引用次数
引用次数
年份
A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells
BM Maoz, A Herland, EA FitzGerald, T Grevesse, C Vidoudez, ...
Nature biotechnology 36 (9), 865, 2018
3882018
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems
AR Pacheco, M Moel, D Segrè
Nature communications 10 (1), 103, 2019
2682019
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS)
I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ...
Nature Protocols, 1-58, 2021
116*2021
A multidimensional perspective on microbial interactions
AR Pacheco, D Segrè
FEMS Microbiology Letters, 2019
822019
Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli
J Beal, T Haddock-Angelli, M Gershater, K De Mora, M Lizarazo, ...
PloS one 11 (3), e0150182, 2016
552016
Non-additive microbial community responses to environmental complexity
AR Pacheco, ML Osborne, D Segrè
Nature communications 12 (1), 2365, 2021
53*2021
Metabolic interaction models recapitulate leaf microbiota ecology
M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller, CM Field, E Vayena, ...
Science 381 (6653), eadf5121, 2023
332023
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling
NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ...
mSystems 6 (6), e00599-21, 2021
192021
An evolutionary algorithm for designing microbial communities via environmental modification
AR Pacheco, D Segrè
Journal of the Royal Society Interface 18 (179), 20210348, 2021
172021
From microbiome composition to functional engineering, one step at a time
SD Burz, S Causevic, A Dal Co, M Dmitrijeva, P Engel, D Garrido-Sanz, ...
Microbiology and Molecular Biology Reviews 87 (4), e00063-23, 2023
112023
Toward FAIR Representations of Microbial Interactions
AR Pacheco, C Pauvert, D Kishore, D Segrè
Msystems 7 (5), e00659-22, 2022
82022
Resolving metabolic interaction mechanisms in plant microbiomes
AR Pacheco, JA Vorholt
Current Opinion in Microbiology 74, 102317, 2023
52023
Stoichiometric modeling of artificial string chemistries reveals constraints on metabolic network structure
D Moyer, AR Pacheco, DB Bernstein, D Segrè
Journal of Molecular Evolution 89 (7), 472-483, 2021
5*2021
Environmental modulation of microbial ecosystems
AR Pacheco
12021
Dimalis: A complete standalone pipeline to analyse prokaryotic cell growth from time-lapse imaging
JR van der Meer, H Todorov, B Bentvelsen, S Ugolini, AR Pacheco, ...
bioRxiv, 2024.04. 23.590675, 2024
2024
BBF RFC 94: Type IIS Assembly for Bacterial Transcriptional Units: A Standardized Assembly Method for Building Bacterial Transcriptional Units Using the Type IIS Restriction …
TL Haddock, DM Densmore, E Appleton, S Carr, S Iverson, M De Freitas, ...
2015
Towards integrated rhizosphere microbial community modeling through bottom-up COMETS genome-scale metabolic simulations and top-down data analysis
I Dukovski, D Segrè
Genetic Systems Engineering
P Vaidyanathan, E Appleton, C Madsen, CI Vasile, A Pacheco, I Haghighi, ...
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