A linked organ-on-chip model of the human neurovascular unit reveals the metabolic coupling of endothelial and neuronal cells BM Maoz, A Herland, EA FitzGerald, T Grevesse, C Vidoudez, ... Nature biotechnology 36 (9), 865, 2018 | 388 | 2018 |
Costless metabolic secretions as drivers of interspecies interactions in microbial ecosystems AR Pacheco, M Moel, D Segrè Nature communications 10 (1), 103, 2019 | 268 | 2019 |
A metabolic modeling platform for the computation of microbial ecosystems in time and space (COMETS) I Dukovski, D Bajić, JM Chacón, M Quintin, JCC Vila, S Sulheim, ... Nature Protocols, 1-58, 2021 | 116* | 2021 |
A multidimensional perspective on microbial interactions AR Pacheco, D Segrè FEMS Microbiology Letters, 2019 | 82 | 2019 |
Reproducibility of Fluorescent Expression from Engineered Biological Constructs in E. coli J Beal, T Haddock-Angelli, M Gershater, K De Mora, M Lizarazo, ... PloS one 11 (3), e0150182, 2016 | 55 | 2016 |
Non-additive microbial community responses to environmental complexity AR Pacheco, ML Osborne, D Segrè Nature communications 12 (1), 2365, 2021 | 53* | 2021 |
Metabolic interaction models recapitulate leaf microbiota ecology M Schäfer, AR Pacheco, R Künzler, M Bortfeld-Miller, CM Field, E Vayena, ... Science 381 (6653), eadf5121, 2023 | 33 | 2023 |
Enhancing Microbiome Research through Genome-Scale Metabolic Modeling NYD Ankrah, DB Bernstein, M Biggs, M Carey, M Engevik, ... mSystems 6 (6), e00599-21, 2021 | 19 | 2021 |
An evolutionary algorithm for designing microbial communities via environmental modification AR Pacheco, D Segrè Journal of the Royal Society Interface 18 (179), 20210348, 2021 | 17 | 2021 |
From microbiome composition to functional engineering, one step at a time SD Burz, S Causevic, A Dal Co, M Dmitrijeva, P Engel, D Garrido-Sanz, ... Microbiology and Molecular Biology Reviews 87 (4), e00063-23, 2023 | 11 | 2023 |
Toward FAIR Representations of Microbial Interactions AR Pacheco, C Pauvert, D Kishore, D Segrè Msystems 7 (5), e00659-22, 2022 | 8 | 2022 |
Resolving metabolic interaction mechanisms in plant microbiomes AR Pacheco, JA Vorholt Current Opinion in Microbiology 74, 102317, 2023 | 5 | 2023 |
Stoichiometric modeling of artificial string chemistries reveals constraints on metabolic network structure D Moyer, AR Pacheco, DB Bernstein, D Segrè Journal of Molecular Evolution 89 (7), 472-483, 2021 | 5* | 2021 |
Environmental modulation of microbial ecosystems AR Pacheco | 1 | 2021 |
Dimalis: A complete standalone pipeline to analyse prokaryotic cell growth from time-lapse imaging JR van der Meer, H Todorov, B Bentvelsen, S Ugolini, AR Pacheco, ... bioRxiv, 2024.04. 23.590675, 2024 | | 2024 |
BBF RFC 94: Type IIS Assembly for Bacterial Transcriptional Units: A Standardized Assembly Method for Building Bacterial Transcriptional Units Using the Type IIS Restriction … TL Haddock, DM Densmore, E Appleton, S Carr, S Iverson, M De Freitas, ... | | 2015 |
Towards integrated rhizosphere microbial community modeling through bottom-up COMETS genome-scale metabolic simulations and top-down data analysis I Dukovski, D Segrè | | |
Genetic Systems Engineering P Vaidyanathan, E Appleton, C Madsen, CI Vasile, A Pacheco, I Haghighi, ... | | |