| Relaxed phylogenetics and dating with confidence AJ Drummond, SYW Ho, MJ Phillips, A Rambaut PLoS biology 4 (5), e88, 2006 | 6654 | 2006 |
| Time dependency of molecular rate estimates and systematic overestimation of recent divergence times SYW Ho, MJ Phillips, A Cooper, AJ Drummond Molecular biology and evolution 22 (7), 1561-1568, 2005 | 1140 | 2005 |
| Accounting for calibration uncertainty in phylogenetic estimation of evolutionary divergence times SYW Ho, MJ Phillips Systematic biology 58 (3), 367-380, 2009 | 913 | 2009 |
| Time‐dependent rates of molecular evolution SYW Ho, R Lanfear, L Bromham, MJ Phillips, J Soubrier, AG Rodrigo, ... Molecular ecology 20 (15), 3087-3101, 2011 | 551 | 2011 |
| Genome-scale phylogeny and the detection of systematic biases MJ Phillips, F Delsuc, D Penny Molecular biology and evolution 21 (7), 1455-1458, 2004 | 476 | 2004 |
| Evidence for time dependency of molecular rate estimates SYW Ho, B Shapiro, MJ Phillips, A Cooper, AJ Drummond Systematic biology 56 (3), 515-522, 2007 | 313 | 2007 |
| The root of the mammalian tree inferred from whole mitochondrial genomes MJ Phillips, D Penny Molecular phylogenetics and evolution 28 (2), 171-185, 2003 | 306 | 2003 |
| Tinamous and moa flock together: mitochondrial genome sequence analysis reveals independent losses of flight among ratites MJ Phillips, GC Gibb, EA Crimp, D Penny Systematic biology 59 (1), 90-107, 2010 | 254 | 2010 |
| The evolutionary history of the extinct ratite moa and New Zealand Neogene paleogeography M Bunce, TH Worthy, MJ Phillips, RN Holdaway, E Willerslev, J Haile, ... Proceedings of the National Academy of Sciences 106 (49), 20646-20651, 2009 | 224 | 2009 |
| Molecular phylogeny, biogeography, and habitat preference evolution of marsupials KJ Mitchell, RC Pratt, LN Watson, GC Gibb, B Llamas, M Kasper, J Edson, ... Molecular biology and evolution 31 (9), 2322-2330, 2014 | 221 | 2014 |
| The prehistory of potyviruses: their initial radiation was during the dawn of agriculture AJ Gibbs, K Ohshima, MJ Phillips, MJ Gibbs PloS one 3 (6), e2523, 2008 | 220 | 2008 |
| Geologically ancient DNA: fact or artefact? MB Hebsgaard, MJ Phillips, E Willerslev TRENDS in Microbiology 13 (5), 212-220, 2005 | 213 | 2005 |
| Growing up with dinosaurs: molecular dates and the mammalian radiation L Bromham, MJ Phillips, D Penny Trends in ecology & evolution 14 (3), 113-118, 1999 | 198 | 1999 |
| Evolution of the extinct Sabretooths and the American cheetah-like cat R Barnett, I Barnes, MJ Phillips, LD Martin, CR Harington, JA Leonard, ... Current Biology 15 (15), R589-R590, 2005 | 178 | 2005 |
| Accuracy of rate estimation using relaxed-clock models with a critical focus on the early metazoan radiation SYW Ho, MJ Phillips, AJ Drummond, A Cooper Molecular biology and evolution 22 (5), 1355-1363, 2005 | 177 | 2005 |
| Four new mitochondrial genomes and the increased stability of evolutionary trees of mammals from improved taxon sampling YH Lin, PA McLenachan, AR Gore, MJ Phillips, R Ota, MD Hendy, ... Molecular Biology and Evolution 19 (12), 2060-2070, 2002 | 177 | 2002 |
| Four new avian mitochondrial genomes help get to basic evolutionary questions in the late Cretaceous GL Harrison, PA McLenachan, MJ Phillips, KE Slack, A Cooper, D Penny Molecular biology and evolution 21 (6), 974-983, 2004 | 176 | 2004 |
| Comment on" Hexapod origins: monophyletic or paraphyletic?" F Delsuc, MJ Phillips, D Penny Science 301 (5639), 1482-1482, 2003 | 163 | 2003 |
| Molecules, morphology, and ecology indicate a recent, amphibious ancestry for echidnas MJ Phillips, TH Bennett, MSY Lee Proceedings of the National Academy of Sciences 106 (40), 17089-17094, 2009 | 150 | 2009 |
| Toward resolving deep Neoaves phylogeny: data, signal enhancement, and priors RC Pratt, GC Gibb, M Morgan-Richards, MJ Phillips, MD Hendy, D Penny Molecular Biology and Evolution 26 (2), 313-326, 2009 | 118 | 2009 |
