Semantic similarity in biomedical ontologies C Pesquita, D Faria, AO Falcao, P Lord, FM Couto PLoS computational biology 5 (7), e1000443, 2009 | 941 | 2009 |
Metrics for GO based protein semantic similarity: a systematic evaluation C Pesquita, D Faria, H Bastos, AEN Ferreira, AO Falcão, FM Couto BMC bioinformatics 9, 1-16, 2008 | 427 | 2008 |
The agreementmakerlight ontology matching system D Faria, C Pesquita, E Santos, M Palmonari, IF Cruz, FM Couto On the Move to Meaningful Internet Systems: OTM 2013 Conferences …, 2013 | 375 | 2013 |
The CHEMDNER corpus of chemicals and drugs and its annotation principles M Krallinger, O Rabal, F Leitner, M Vazquez, D Salgado, Z Lu, R Leaman, ... Journal of cheminformatics 7, 1-17, 2015 | 342 | 2015 |
Measuring semantic similarity between Gene Ontology terms FM Couto, MJ Silva, PM Coutinho Data & knowledge engineering 61 (1), 137-152, 2007 | 291 | 2007 |
Facts from text—is text mining ready to deliver? D Rebholz-Schuhmann, H Kirsch, F Couto PLoS Biol 3 (2), e65, 2005 | 188 | 2005 |
Semantic similarity over the gene ontology: family correlation and selecting disjunctive ancestors FM Couto, MJ Silva, PM Coutinho Proceedings of the 14th ACM international conference on Information and …, 2005 | 153 | 2005 |
Evaluating gobased semantic similarity measures C Pesquita, D Faria, H Bastos, A Falcão, F Couto Proc. 10th Annual Bio-Ontologies Meeting 2007, 37-40, 2007 | 152 | 2007 |
Ontology alignment repair through modularization and confidence-based heuristics E Santos, D Faria, C Pesquita, FM Couto PloS one 10 (12), e0144807, 2015 | 93 | 2015 |
Identifying disease genes using machine learning and gene functional similarities, assessed through Gene Ontology M Asif, HF Martiniano, AM Vicente, FM Couto PloS one 13 (12), e0208626, 2018 | 89 | 2018 |
Disjunctive shared information between ontology concepts: application to Gene Ontology FM Couto, MJ Silva Journal of biomedical semantics 2, 1-16, 2011 | 86 | 2011 |
To repair or not to repair: reconciling correctness and coherence in ontology reference alignments C Pesquita, D Faria, E Santos, FM Couto Proc. 8th ISWC ontology matching workshop (OM), Sydney (AU), page this volume 3, 2013 | 81 | 2013 |
Finding genomic ontology terms in text using evidence content F Couto, M Silva, P Coutinho BMC bioinformatics 6 (Suppl 1), S21, 2005 | 80 | 2005 |
GOAnnotator: linking protein GO annotations to evidence text F Couto, M Silva, V Lee, E Dimmer, E Camon, R Apweiler, H Kirsch, ... Journal of Biomedical Discovery and Collaboration 1 (1), 19, 2006 | 79 | 2006 |
Automatic concept recognition using the human phenotype ontology reference and test suite corpora T Groza, S Köhler, S Doelken, N Collier, A Oellrich, D Smedley, FM Couto, ... Database 2015, bav005, 2015 | 78 | 2015 |
The semantic web in translational medicine: current applications and future directions CM Machado, D Rebholz-Schuhmann, AT Freitas, FM Couto Briefings in bioinformatics 16 (1), 89-103, 2015 | 78 | 2015 |
CESSM: collaborative evaluation of semantic similarity measures C Pesquita, D Pessoa, D Faria, F Couto JB2009: challenges in bioinformatics 157, 190, 2009 | 76 | 2009 |
AgreementMakerLight results for OAEI 2013. D Faria, C Pesquita, E Santos, IF Cruz, FM Couto OM, 101-108, 2013 | 73 | 2013 |
BO-LSTM: classifying relations via long short-term memory networks along biomedical ontologies A Lamurias, D Sousa, LA Clarke, FM Couto BMC bioinformatics 20, 1-12, 2019 | 71 | 2019 |
Using AgreementMaker to align ontologies for OAEI 2011 IF Cruz, C Stroe, F Caimi, A Fabiani, C Pesquita, FM Couto, M Palmonari ISWC international workshop on ontology matching (OM) 814, 114-121, 2011 | 71 | 2011 |