VIBRANT: automated recovery, annotation and curation of microbial viruses, and evaluation of viral community function from genomic sequences K Kieft, Z Zhou, K Anantharaman Microbiome 8, 1-23, 2020 | 593 | 2020 |
METABOLIC: high-throughput profiling of microbial genomes for functional traits, metabolism, biogeochemistry, and community-scale functional networks Z Zhou, PQ Tran, AM Breister, Y Liu, K Kieft, ES Cowley, U Karaoz, ... Microbiome 10 (1), 33, 2022 | 241* | 2022 |
Bathyarchaeota: globally distributed metabolic generalists in anoxic environments Z Zhou, J Pan, F Wang, JD Gu, M Li FEMS microbiology reviews 42 (5), 639-655, 2018 | 230 | 2018 |
Insights into the ecology, evolution, and metabolism of the widespread Woesearchaeotal lineages X Liu, M Li, CJ Castelle, AJ Probst, Z Zhou, J Pan, Y Liu, JF Banfield, ... Microbiome 6, 1-16, 2018 | 216 | 2018 |
Genome diversification in globally distributed novel marine Proteobacteria is linked to environmental adaptation Z Zhou, PQ Tran, K Kieft, K Anantharaman The ISME journal 14 (8), 2060-2077, 2020 | 150 | 2020 |
Ecology of inorganic sulfur auxiliary metabolism in widespread bacteriophages K Kieft, Z Zhou, RE Anderson, A Buchan, BJ Campbell, SJ Hallam, ... Nature communications 12 (1), 3503, 2021 | 124 | 2021 |
Complex microbial nitrogen-cycling networks in three distinct anammox-inoculated wastewater treatment systems Y Yang, J Pan, Z Zhou, J Wu, Y Liu, JG Lin, Y Hong, X Li, M Li, JD Gu Water research 168, 115142, 2020 | 122 | 2020 |
Stratified bacterial and archaeal community in mangrove and intertidal wetland mudflats revealed by high throughput 16S rRNA gene sequencing Z Zhou, H Meng, Y Liu, JD Gu, M Li Frontiers in microbiology 8, 2148, 2017 | 116 | 2017 |
Comparative genomic inference suggests mixotrophic lifestyle for Thorarchaeota Y Liu, Z Zhou, J Pan, BJ Baker, JD Gu, M Li The ISME journal 12 (4), 1021-1031, 2018 | 105 | 2018 |
Genomic and transcriptomic insights into the ecology and metabolism of benthic archaeal cosmopolitan, Thermoprofundales (MBG-D archaea) Z Zhou, Y Liu, KG Lloyd, J Pan, Y Yang, JD Gu, M Li The ISME journal 13 (4), 885-901, 2019 | 103 | 2019 |
Occurrence and diversity of nitrite-dependent anaerobic methane oxidation bacteria in the sediments of the South China Sea revealed by amplification of both 16S rRNA and pmoA genes J Chen, ZC Zhou, JD Gu Applied Microbiology and Biotechnology 98, 5685-5696, 2014 | 101 | 2014 |
High Frequency of Thermodesulfovibrio spp. and Anaerolineaceae in Association with Methanoculleus spp. in a Long-Term Incubation of n-Alkanes-Degrading … B Liang, LY Wang, Z Zhou, SM Mbadinga, L Zhou, JF Liu, SZ Yang, JD Gu, ... Frontiers in microbiology 7, 1431, 2016 | 96 | 2016 |
Complex community of nitrite-dependent anaerobic methane oxidation bacteria in coastal sediments of the Mai Po wetland by PCR amplification of both 16S rRNA and pmoA genes J Chen, Z Zhou, JD Gu Applied microbiology and biotechnology 99, 1463-1473, 2015 | 86 | 2015 |
Diverse Asgard archaea including the novel phylum Gerdarchaeota participate in organic matter degradation M Cai, Y Liu, X Yin, Z Zhou, MW Friedrich, T Richter-Heitmann, R Nimzyk, ... Science China Life Sciences 63, 886-897, 2020 | 85* | 2020 |
Pedobacter arcticus sp. nov., a facultative psychrophile isolated from Arctic soil, and emended descriptions of the genus Pedobacter, Pedobacter heparinus, Pedobacter … Z Zhou, F Jiang, S Wang, F Peng, J Dai, W Li, C Fang International journal of systematic and evolutionary microbiology 62 (8 …, 2012 | 78 | 2012 |
Genome- and Community-Level Interaction Insights into Carbon Utilization and Element Cycling Functions of Hydrothermarchaeota in Hydrothermal Sediment Z Zhou, Y Liu, W Xu, J Pan, ZH Luo, M Li Msystems 5 (1), 10.1128/msystems. 00795-19, 2020 | 74 | 2020 |
Patterns and processes of free‐living and particle‐associated bacterioplankton and archaeaplankton communities in a subtropical river‐bay system in South China Y Wang, J Pan, J Yang, Z Zhou, Y Pan, M Li Limnology and Oceanography 65, S161-S179, 2020 | 62 | 2020 |
Polysaccharide utilization loci in Bacteroides determine population fitness and community-level interactions J Feng, Y Qian, Z Zhou, S Ertmer, EI Vivas, F Lan, JJ Hamilton, FE Rey, ... Cell host & microbe 30 (2), 200-215. e12, 2022 | 54 | 2022 |
Virus-associated organosulfur metabolism in human and environmental systems KA Kristopher Kieft, Adam M. Breister, Phil Huss, Alexandra M. Linz ... Cell Reports 36 (5), 109471, 2021 | 53 | 2021 |
Vertical distribution of Bathyarchaeotal communities in mangrove wetlands suggests distinct niche preference of Bathyarchaeota subgroup 6 J Pan, Y Chen, Y Wang, Z Zhou, M Li Microbial ecology 77, 417-428, 2019 | 51 | 2019 |