| Performance of Common Analysis Methods for Detecting Low-Frequency Single Nucleotide Variants in Targeted Next-Generation Sequence Data DH Spencer, M Tyagi, F Vallania, AJ Bredemeyer, JD Pfeifer, RD Mitra, ... The Journal of Molecular Diagnostics 16 (1), 75-88, 2014 | 159 | 2014 |
| Cancer missense mutations alter binding properties of proteins and their interaction networks H Nishi, M Tyagi, S Teng, BA Shoemaker, K Hashimoto, E Alexov, ... PLoS One 8 (6), e66273, 2013 | 139 | 2013 |
| A short survey on protein blocks AP Joseph, G Agarwal, S Mahajan, JC Gelly, LS Swapna, B Offmann, ... Biophysical reviews 2, 137-145, 2010 | 135 | 2010 |
| Local protein structures B Offmann, M Tyagi, AG de Brevern Current Bioinformatics 2 (3), 165-202, 2007 | 123 | 2007 |
| IBIS (Inferred Biomolecular Interaction Server) reports, predicts and integrates multiple types of conserved interactions for proteins BA Shoemaker, D Zhang, M Tyagi, RR Thangudu, JH Fong, ... Nucleic acids research 40 (D1), D834-D840, 2012 | 91 | 2012 |
| Tremelimumab in combination with microwave ablation in patients with refractory biliary tract cancer C Xie, AG Duffy, D Mabry‐Hrones, B Wood, E Levy, V Krishnasamy, ... Hepatology 69 (5), 2048-2060, 2019 | 90 | 2019 |
| Inferred Biomolecular Interaction Server—a web server to analyze and predict protein interacting partners and binding sites BA Shoemaker, D Zhang, RR Thangudu, M Tyagi, JH Fong, ... Nucleic acids research 38 (suppl 1), D518-D524, 2010 | 86 | 2010 |
| A substitution matrix for structural alphabet based on structural alignment of homologous proteins and its applications M Tyagi, VS Gowri, N Srinivasan, AG de Brevern, B Offmann PROTEINS: Structure, Function, and Bioinformatics 65 (1), 32-39, 2006 | 79 | 2006 |
| Protein structure mining using a structural alphabet M Tyagi, AG De Brevern, N Srinivasan, B Offmann Proteins: Structure, Function, and Bioinformatics 71 (2), 920-937, 2008 | 78 | 2008 |
| Protein Block Expert (PBE): a web-based protein structure analysis server using a structural alphabet M Tyagi, P Sharma, CS Swamy, F Cadet, N Srinivasan, AG de Brevern, ... Nucleic acids research 34 (suppl_2), W119-W123, 2006 | 72 | 2006 |
| Large-scale mapping of human protein interactome using structural complexes M Tyagi, K Hashimoto, BA Shoemaker, S Wuchty, AR Panchenko EMBO reports 13 (3), 266-271, 2012 | 56 | 2012 |
| Whole-exome sequencing reveals germline-mutated small cell lung cancer subtype with favorable response to DNA repair–targeted therapies C Tlemsani, N Takahashi, L Pongor, VN Rajapakse, M Tyagi, X Wen, ... Science translational medicine 13 (578), eabc7488, 2021 | 52 | 2021 |
| Impact of the methylation classifier and ancillary methods on CNS tumor diagnostics Z Wu, Z Abdullaev, D Pratt, HJ Chung, S Skarshaug, V Zgonc, C Perry, ... Neuro-oncology 24 (4), 571-581, 2022 | 49 | 2022 |
| Analysis of loop boundaries using different local structure assignment methods M Tyagi, A Bornot, B Offmann, AG de Brevern Protein Science 18 (9), 1869-1881, 2009 | 44 | 2009 |
| Immuno-transcriptomic profiling of extracranial pediatric solid malignancies AS Brohl, S Sindiri, JS Wei, D Milewski, HC Chou, YK Song, X Wen, ... Cell reports 37 (8), 2021 | 41 | 2021 |
| Exploring functional roles of multibinding protein interfaces M Tyagi, BA Shoemaker, SH Bryant, AR Panchenko Protein Science 18 (8), 1674-1683, 2009 | 35 | 2009 |
| Protein short loop prediction in terms of a structural alphabet M Tyagi, A Bornot, B Offmann, AG De Brevern Computational Biology and Chemistry 33 (4), 329-333, 2009 | 30 | 2009 |
| An activating mutation of interferon regulatory factor 4 (IRF4) in adult T-cell leukemia MA Cherian, S Olson, H Sundaramoorthi, K Cates, X Cheng, J Harding, ... Journal of Biological Chemistry 293 (18), 6844-6858, 2018 | 27 | 2018 |
| Homology inference of protein-protein interactions via conserved binding sites M Tyagi, RR Thangudu, D Zhang, SH Bryant, T Madej, AR Panchenko PLoS One 7 (1), e28896, 2012 | 23 | 2012 |
| Knowledge-based annotation of small molecule binding sites in proteins RR Thangudu, M Tyagi, BA Shoemaker, SH Bryant, AR Panchenko, ... BMC bioinformatics 11, 1-12, 2010 | 20 | 2010 |
